Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0275 ATGGCTTGTAAGGAAACGACTTGGCTTCTCTCCCTTCTTCTCATGCTGCTATGCATCATGGTATCAGCAGATACGCCTGAGTCCACTATTCTTGTCAAGTTCAAGGCCTCTTTGTTTAATGCCTCAGCACTTCGCGATTGGAATGAGTCTTCAGATCCATGTTCAGATGGCAATGGTTGGACAGGTGTAAAGTGCTTTGAGGGGAAAGTATGGACGTTGCAGCTAGAAAATATGGGACTGGCAGGCCAAATTGATATTGAATCACTTAAGGAGTTACAAATGTTGCGAACTATAAGCATCATGGGCAACAGCTTTGGTGGTCCAATGCCTGCTTTCAAGAGACTTGCTGCATTGAAATCATTGTATTTGTCCAACAACCGGTTTTCTGGTGAGCTTCCTCATGATGCTTTTGCTCACATGAATTGGTTGAAGAAAGTTCATCTGGCACAGAATGAGTTTACTGGCAAGATCCCCAAGTCTCTTGCTAAGTTGCCAAGGCTTTTGGAGGTGCTGCTTGAGAACAACAATTTTGAAGGAAAGATACCCAAATTTCCACAGAATGAACTGCAAATGGTGAACATGTCAAACAATGCATTGGAGGGTCGTATACCAGCTAGCCTAAGCAAGATGGACAGGAGCTCATTCATTGGCAACGAAGATCTATGTGGTCTGCCTCTGGAGCCATGCAAGGAATCTAAGAAGCCGAGTATCCTCATCATTGCCCTAGTTGTTGGTGGGGTGGTGGTACTGGCGGCCATAATAGCAGCTGTCTTCTTAATCTGCAGGCAAAAGGGCAAAGCATCCAAATTGGGGCAGCCCTCATCAGCAAAAGCCCATAAGGAGGCTGCTGTCTATGAGGCCGAACACAAGGAAGTTGGATCCACTGGGGTTTACAAGAAGGGTGAACAAGGACAGTTATACTTTGTAAGGAATGATAGGGAGAGGTTTGAGCTGCAAGACCTGCTTAGAGCTTCTGCTGAGGTTCTGGGCAGTGGGAGCTTTGGGTCTTCTTACAAGGCTGTTCTTCTCAGTGGACCAGCCATGGTTGTAAAGAGGTTTAAGCAAATGAACAGATTGGGAAGCGGCGATTTCCATGAGCACATGAGAAGGCTAGGAAGGTTGTCACACCCCAACTTGCTTTCTCTTGTGGCCTTCTATTATAAAAAGGAAGAAAAGCTTCTGGTTTCTGATTTTGTGCCTAATGGCAGCTTGGCTAGTCATCTTCATAGTAAACGCGCTCCTGGCCAGCCAGGGCTCGACTGGCCAATTCGCTTGAAGATCATACAAAAAGTGGCCCACGCCTTAGCTTACCTCTACAAAGAGCTTTCTGACTTGACTCTACCTCATGGTCACCTAAAGTCTTCCAATGTGCTTCTAGACGACAAATTTGAGCCAGTACTATCAGACTATGCACTTGTGCCTGCAATCAACAGAGAGCATGCTCAGCAGATCATGGTGGCGTATAAATCGCCAGAGTTTATGCAGTATGATCGAACAACGAGGAAGACAGATGTATGGAGCCTTGGGATACTAATACTGGAGATGCTGACAGGTAAGTTCCCGGCAAATTATCTGAAACAAGGTAAGGGTGCTAATTCTGATTTGCTCAGCTGGGTGAACTCTGTTGTAAGAGAGGAGTGGACTGGTGAGGTGTTTGATAAAGATATGAAGGGCACAAGGAATGGGGAAGGTGAGATGCTTAAGCTGTTGAAGATTGGAATGAGTTGCTGTGAATGGAATATGGAGAAGAGGTGGGATTTGAAGGAGGCTGTTAAGAGGATTGAAGAGTTGAAGGAGAGGGATTCAGATGAAGACAACTCTTCATATGCTAGTGAAGGAGACATTTACTCTTCTAGAGCTATGACTGATGATGACTTCTCTTTCTCAGTTAACAATTGA 1899 0.4534 MACKETTWLLSLLLMLLCIMVSADTPESTILVKFKASLFNASALRDWNESSDPCSDGNGWTGVKCFEGKVWTLQLENMGLAGQIDIESLKELQMLRTISIMGNSFGGPMPAFKRLAALKSLYLSNNRFSGELPHDAFAHMNWLKKVHLAQNEFTGKIPKSLAKLPRLLEVLLENNNFEGKIPKFPQNELQMVNMSNNALEGRIPASLSKMDRSSFIGNEDLCGLPLEPCKESKKPSILIIALVVGGVVVLAAIIAAVFLICRQKGKASKLGQPSSAKAHKEAAVYEAEHKEVGSTGVYKKGEQGQLYFVRNDRERFELQDLLRASAEVLGSGSFGSSYKAVLLSGPAMVVKRFKQMNRLGSGDFHEHMRRLGRLSHPNLLSLVAFYYKKEEKLLVSDFVPNGSLASHLHSKRAPGQPGLDWPIRLKIIQKVAHALAYLYKELSDLTLPHGHLKSSNVLLDDKFEPVLSDYALVPAINREHAQQIMVAYKSPEFMQYDRTTRKTDVWSLGILILEMLTGKFPANYLKQGKGANSDLLSWVNSVVREEWTGEVFDKDMKGTRNGEGEMLKLLKIGMSCCEWNMEKRWDLKEAVKRIEELKERDSDEDNSSYASEGDIYSSRAMTDDDFSFSVNN* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0275 632 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 84 181 - -
Vvi4g0275 632 Coils Coil 580 600 - -
Vvi4g0275 632 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
Vvi4g0275 632 SUPERFAMILY L domain-like 52 214 - -
Vvi4g0275 632 Gene3D Ribonuclease Inhibitor 189 229 IPR032675 -
Vvi4g0275 632 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 603 IPR046959 -
Vvi4g0275 632 FunFam Pollen receptor-like kinase 1 399 608 - -
Vvi4g0275 632 SUPERFAMILY Protein kinase-like (PK-like) 327 598 IPR011009 -
Vvi4g0275 632 Pfam Protein kinase domain 326 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0275 632 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Vvi4g0275 632 ProSiteProfiles Protein kinase domain profile. 323 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0275 632 Gene3D Transferase(Phosphotransferase) domain 1 399 620 - -
Vvi4g0275 632 Gene3D Phosphorylase Kinase; domain 1 291 398 - -
Vvi4g0275 632 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Vvi4g0275 632 FunFam pollen receptor-like kinase 1 293 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0275 Vvi-Chr4 2391465 2394261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0275 12 624 Receptor kinase-like Gene Family AT4G31250 51.364 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi4g0275 Pkinase 2.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0275 - - vvi:104878991 1220.3