Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0264 ATGGACGGCGTCAAGCCAGTTGCTTCGGCTGAGCAAGGAGGTGCTGTTGAAGCTCGATTTACAGAGTTCTGCAAGAATGGGTTACAATTGGATGAGAGCACTTTCGCACAAGCTATGAAGCTGTTTGAGGAAAGCAATCACCTACTGTCTACTACAAGCCTGTCTGCAATTGGGAATGGGCCAGAAGATTCTGAACGGTATTGGTTTGCATTCATTTTGTATTCCGTCAAGAGATTGAGTGAAGGGACTGCAGAAAATGTTCAGCAAGGGAATGATGAAAATGGGTTTAATTTGTGCCAGATTTTGAGGGTTTCAAAGCTCAACATTGTCGATTTCTTCAAAGAGCTTCCACAGTTCATCGTCAAGGTTGGTCCAATTCTTGGAAATCTATATGGCCCCGATTGGGAGAAAAGGCTTGAGGCAAAGGAGTTGCAGGCCAATTTTGTGCACTTGAGTATTCTAAGCAAGTACTATAAGCGTGCATACCTGGAATTCTTCTCCACAAGTGGTTCCAACCTTGATAAGCAGTCGTCTGTTATCAGTGCTTCAGGCTATGTGTCAGACTATCATCGGTTTGGATGGTTACTGTTTTTGGCGTTACGTGTTCACGCATTTAGTCGATTTAAGGACCTAGTGACTTGCACAAATGGCTTGGTTTCTATATTGGCCATCCTGATACTTCACGTGCCTATTTCCTTCAGAAGTTTCACTATCAACAACTATCCACGTTTTGTTAAGAAAGGCAATAAAGGTATGGATCTGCTTGCATCCCTTTGTGACATTTATGAGACATCAGAAGATGAAGTAAGAAAAACAATGGAGCAGACCAACAAAGTAATAGTCGATATCTTGAAGAAGAAACCTTGTTTGGCATCAGAGTGTAAATCTGAAAACTTAGCGAGTATTGACCCAGATGGCTTGGTTTATTTTGAAGATCTAATGGACGAATCATCTTTATCATCCAGTATAAATATTCTAGAGAAGGATTATGATGCTGCAATTCGTAATAAGGGTGAACTGGATGAGAGGGTATTCATTAATGGGGAGGATAGCTTACTTGGCTCAGGGAGTTTGTCTGGCGGTGCCATGAGTATAAGTGGTGCCAAGAGGAAAATTGATTCACTGGCCTCCCCAGCAAAGACAATTACAAGTCCGCTGTCTCCCAACCGCTCGCCTGGCATTCTTGGTGGTGCTAACTCAAAGATGGCACCGACACCTGTGACCACAGCTATGACTACTGCAAAGTGGCTCCGGACGGTTATTTCTCCGCTTCCATCAAAGCCCTCTGCCGAACTGGAGCGATTCCTAACATCATGTGACAAGGATGTTACTAGTGATGTGATCCGCAGGGCTAACGTAATATTGGAGGCCATTTTTCCAAGTATTGCTTTTGGAGAGCGTTGTGTCACTGGAAGTGCGAGTCTGATGGACAGCATATGGGCACAACAAAGAAGAATGGAAGCAATGAAGTTATACTATAGGGTGTTGGAAGCAATGTGTACCGCTGAAGCTCAAGTTTTGCATGCAAATAATTTAACCTCCTTATTAACCAATGAGAGGTTCCATAGGTGTATGCTTGCTTGTTCTGCAGAGCTGGTTTTGGCTACCCATAAGACAGTTACAATGTTGTTCCCTGCAGTATTGGAGAGAACTGGCATCACAGCTTTTGATCTTAGCAAGGTGATAGAAAGTTTCATTAGACATGAGGAGTCTCTTCCAAGGGAATTGAGGCGTCATCTTAATTCCTTGGAAGAGCGACTTTTGGAAAGCATGGTATGGGAGAAGGGCTCCTCTATGTATAATTCTTTGATAGTTGCGAGGGCAGCCCTTTCGGCAGAAGTAAACCGGCTTGGATTATTAGCAGAACCTATGCCATCTTTGGATGCTATTTCCATGCATATTAATGCTTCCTGTGGTGGCTTGCCTCCTGTGCCTTCTTTGCAGAAGCGTGAGAGTTCACCAGGTCAGAATGGAGATATTCGGTCCCCAAAGAGAGTGTGCCCTGATTATCGAAGTGTGTTGGTGGAACGGAATTCTTTTACGTCCCCAGTAAAGGATCGCTTCCTGGCATTAAATAATCTCAAGTCCAAGTTACCGCCTCCCCCCTTGCAATCTGCATTTGCAAGTCCAACACGGCCAAATCCAGGACGCGAAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGATAATAAAGTTAGCTGCTGTCAGAATTAATGGTATGGTTGAGAGGCTACAACTGTCTCAACAGATGCGAGAGAATGTGTACTGTCTTTTCCAACAAATCCTTAATCGGCGAACGAGTCTCTTCTTTAACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAGATCTCTCAAATGAACCTGACCTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAAAAACAGGGAAGGAACATGTTGATATTATCACATTTTACAATGAAATTTTTATTCCGGCTGTAAAGCCGCTGTTAATGGAGATTGGGCCTGGTGGTGGAACAACTACAAAAACTAACAGGGTTCCTGAAGTTAACAATAACAATGATGCTCAATGTCCTGAATCACCAAAGATTTCTCCTTTTCCAAGTCTTCCTGACATGTCTCCGAAGAAAGTATCCGCTGCACACAATGTCTATGTCTCCCCATTGCGGTCATCTAAGATGGATGCTTTAATCTCACATAGTTCTAAAAGTTACTATGCTTGTGTTGGAGAGAGTACTCATGCTTATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGTACCCGGAAGCTCAGAGGCGCACTCAACTTCGACGATGTCGAGGGTTTAGTTAGCGACTCCTTGGTGGCCAAAAGCCTGTACCTTCAAAATGGGAGCTGTGCATCCTCATCAGGTGCACCGTTGAAATTAGAGCAACCTGACACGTAG 3021 0.4373 MDGVKPVASAEQGGAVEARFTEFCKNGLQLDESTFAQAMKLFEESNHLLSTTSLSAIGNGPEDSERYWFAFILYSVKRLSEGTAENVQQGNDENGFNLCQILRVSKLNIVDFFKELPQFIVKVGPILGNLYGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTSGSNLDKQSSVISASGYVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPISFRSFTINNYPRFVKKGNKGMDLLASLCDIYETSEDEVRKTMEQTNKVIVDILKKKPCLASECKSENLASIDPDGLVYFEDLMDESSLSSSINILEKDYDAAIRNKGELDERVFINGEDSLLGSGSLSGGAMSISGAKRKIDSLASPAKTITSPLSPNRSPGILGGANSKMAPTPVTTAMTTAKWLRTVISPLPSKPSAELERFLTSCDKDVTSDVIRRANVILEAIFPSIAFGERCVTGSASLMDSIWAQQRRMEAMKLYYRVLEAMCTAEAQVLHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARAALSAEVNRLGLLAEPMPSLDAISMHINASCGGLPPVPSLQKRESSPGQNGDIRSPKRVCPDYRSVLVERNSFTSPVKDRFLALNNLKSKLPPPPLQSAFASPTRPNPGREGETCAETGINIFFSKIIKLAAVRINGMVERLQLSQQMRENVYCLFQQILNRRTSLFFNRHIDQIILCCFYGLAKISQMNLTFREIIHNYRKQPQCKPQIFRSVFVDWSSARRNGKTGKEHVDIITFYNEIFIPAVKPLLMEIGPGGGTTTKTNRVPEVNNNNDAQCPESPKISPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSTRKLRGALNFDDVEGLVSDSLVAKSLYLQNGSCASSSGAPLKLEQPDT* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0264 1006 FunFam Retinoblastoma-related protein 1 678 888 - -
Vvi4g0264 1006 CDD CYCLIN_AtRBR_like 727 858 - -
Vvi4g0264 1006 Gene3D - 690 897 - -
Vvi4g0264 1006 Pfam Retinoblastoma-associated protein B domain 727 854 IPR002719 GO:0005634|GO:0051726
Vvi4g0264 1006 Gene3D - 408 593 - -
Vvi4g0264 1006 Pfam Domain of unknown function (DUF3452) 89 228 IPR024599 -
Vvi4g0264 1006 MobiDBLite consensus disorder prediction 643 664 - -
Vvi4g0264 1006 FunFam Retinoblastoma-related protein 1 189 347 - -
Vvi4g0264 1006 Pfam Retinoblastoma-associated protein A domain 405 603 IPR002720 GO:0005634|GO:0051726
Vvi4g0264 1006 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 15 1004 IPR028309 GO:0006357|GO:0051726
Vvi4g0264 1006 Coils Coil 323 343 - -
Vvi4g0264 1006 SMART DUF3452_2 79 228 IPR024599 -
Vvi4g0264 1006 FunFam Retinoblastoma-related protein 1 408 593 - -
Vvi4g0264 1006 SUPERFAMILY Cyclin-like 413 605 IPR036915 -
Vvi4g0264 1006 Gene3D - 189 347 - -
Vvi4g0264 1006 SUPERFAMILY Cyclin-like 725 895 IPR036915 -
Vvi4g0264 1006 SMART RB_A_2 405 603 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0264 Vvi-Chr4 2305090 2312210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0264 13 1006 Core Cell Cycle Gene Families AT3G12280 69.832 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Vvi4g0264 RB_A 6.1e-66 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0264 K04681 - vvi:100261011 1931.76