Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0263 ATGAATGATCTGATGACAAAATCGTTCATCAGCTATGTGGATCTGAAGAAGGAAGCCATGAAGGACTTGGAAGCGGGTCCTGAATATGATCTGCAGATGTCCGGAACCCAGATGGACAGGAACCTGGGTTTGTTCTTGGAGGAGGCCGAGAAGGTGAAGCAGGAGATGGGTTTGATTAGAGAGATTTTGGGGAGGCTGCATGAGGCCAATGAAGAGAGCAAGTCCCTGCACAAGCCTGAGGCTCTGAAATCACTGCGGAACCGAATCAATGCCGATATCATTGGGGTGCAGAAGAAGGCCAGAGCCATCAAGTCTCAGCTCGAGGAGATGGACCGCGCCAATGCTGCTAATATGAGGCTCTCAGGTTACAAAGAGGGTACTCCGGTGTACAGGACTAGGGCTGCGGTCACGAATGGGCTGAGGAAGAAGCTCAAGGAGCTGATGATGGACTTTCAGGGGCTGAGGCAGAGGATGATGACGGAGTACAAGGAGACGGTGGGGAGGCGGTATTTTACAGTGACAGGGGAGTACCCTGATGAGGAGGTGATAGAGAAGATTATATCGAATGGGGAAGGGGGTGAGGAGTTTTTGGGGAGGGCGATACAGGAGCATGGAAGAGGGAAGGTGTTGGAGACAGTGGTGGAGATACAGGACAGGCATGACGCGGCTAAGGAGATAGAGAAGAGCTTGTTGGAGCTGCACCAGGTGTTTCTGGACATGGCAATAATGGTGGAGGCGCAGGGGGAGCAGATGGATGACATTGAGCACCATGTGATGAATGCAGCCCAGTACGTCAAGGATGGAACGAAGAATCTCAAGACTGCCAAAGACTACCAGAGGAGCAGCAGGAAGTGCATGTGTTTGGGTGTTATACTTCTGCTGATACTAATTCTTATAGTGGTCATCCCCATTGCTACCAGTTTTAGCAACTCTTAA 936 0.5096 MNDLMTKSFISYVDLKKEAMKDLEAGPEYDLQMSGTQMDRNLGLFLEEAEKVKQEMGLIREILGRLHEANEESKSLHKPEALKSLRNRINADIIGVQKKARAIKSQLEEMDRANAANMRLSGYKEGTPVYRTRAAVTNGLRKKLKELMMDFQGLRQRMMTEYKETVGRRYFTVTGEYPDEEVIEKIISNGEGGEEFLGRAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAIMVEAQGEQMDDIEHHVMNAAQYVKDGTKNLKTAKDYQRSSRKCMCLGVILLLILILIVVIPIATSFSNS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0263 311 SUPERFAMILY t-snare proteins 41 268 IPR010989 GO:0016020|GO:0016192
Vvi4g0263 311 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 213 275 IPR000727 -
Vvi4g0263 311 CDD SynN 45 200 IPR006011 GO:0016020
Vvi4g0263 311 PANTHER SYNTAXIN 54 297 IPR045242 -
Vvi4g0263 311 ProSitePatterns Syntaxin / epimorphin family signature. 219 259 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi4g0263 311 SMART tSNARE_6 208 275 IPR000727 -
Vvi4g0263 311 Gene3D - 209 308 - -
Vvi4g0263 311 Gene3D - 42 169 - -
Vvi4g0263 311 Pfam Syntaxin 45 248 IPR006011 GO:0016020
Vvi4g0263 311 CDD SNARE_syntaxin1-like 212 274 - -
Vvi4g0263 311 Pfam SNARE domain 249 301 IPR000727 -
Vvi4g0263 311 FunFam Syntaxin 132 206 306 - -
Vvi4g0263 311 SMART SynN_4 37 163 IPR006011 GO:0016020
Vvi4g0263 311 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0263 Vvi-Chr4 2303750 2304685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0263 1 311 SNARE and Associated Proteins AT1G08560 71.019 1.12e-151 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0263 K08486 - vvi:100254385 595.89