LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g0263	ATGAATGATCTGATGACAAAATCGTTCATCAGCTATGTGGATCTGAAGAAGGAAGCCATGAAGGACTTGGAAGCGGGTCCTGAATATGATCTGCAGATGTCCGGAACCCAGATGGACAGGAACCTGGGTTTGTTCTTGGAGGAGGCCGAGAAGGTGAAGCAGGAGATGGGTTTGATTAGAGAGATTTTGGGGAGGCTGCATGAGGCCAATGAAGAGAGCAAGTCCCTGCACAAGCCTGAGGCTCTGAAATCACTGCGGAACCGAATCAATGCCGATATCATTGGGGTGCAGAAGAAGGCCAGAGCCATCAAGTCTCAGCTCGAGGAGATGGACCGCGCCAATGCTGCTAATATGAGGCTCTCAGGTTACAAAGAGGGTACTCCGGTGTACAGGACTAGGGCTGCGGTCACGAATGGGCTGAGGAAGAAGCTCAAGGAGCTGATGATGGACTTTCAGGGGCTGAGGCAGAGGATGATGACGGAGTACAAGGAGACGGTGGGGAGGCGGTATTTTACAGTGACAGGGGAGTACCCTGATGAGGAGGTGATAGAGAAGATTATATCGAATGGGGAAGGGGGTGAGGAGTTTTTGGGGAGGGCGATACAGGAGCATGGAAGAGGGAAGGTGTTGGAGACAGTGGTGGAGATACAGGACAGGCATGACGCGGCTAAGGAGATAGAGAAGAGCTTGTTGGAGCTGCACCAGGTGTTTCTGGACATGGCAATAATGGTGGAGGCGCAGGGGGAGCAGATGGATGACATTGAGCACCATGTGATGAATGCAGCCCAGTACGTCAAGGATGGAACGAAGAATCTCAAGACTGCCAAAGACTACCAGAGGAGCAGCAGGAAGTGCATGTGTTTGGGTGTTATACTTCTGCTGATACTAATTCTTATAGTGGTCATCCCCATTGCTACCAGTTTTAGCAACTCTTAA	936	0.5096	MNDLMTKSFISYVDLKKEAMKDLEAGPEYDLQMSGTQMDRNLGLFLEEAEKVKQEMGLIREILGRLHEANEESKSLHKPEALKSLRNRINADIIGVQKKARAIKSQLEEMDRANAANMRLSGYKEGTPVYRTRAAVTNGLRKKLKELMMDFQGLRQRMMTEYKETVGRRYFTVTGEYPDEEVIEKIISNGEGGEEFLGRAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAIMVEAQGEQMDDIEHHVMNAAQYVKDGTKNLKTAKDYQRSSRKCMCLGVILLLILILIVVIPIATSFSNS*	312

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g0263	311	SUPERFAMILY	t-snare proteins	41	268	IPR010989	GO:0016020\|GO:0016192
	Vvi4g0263	311	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	213	275	IPR000727	-
	Vvi4g0263	311	CDD	SynN	45	200	IPR006011	GO:0016020
	Vvi4g0263	311	PANTHER	SYNTAXIN	54	297	IPR045242	-
	Vvi4g0263	311	ProSitePatterns	Syntaxin / epimorphin family signature.	219	259	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Vvi4g0263	311	SMART	tSNARE_6	208	275	IPR000727	-
	Vvi4g0263	311	Gene3D	-	209	308	-	-
	Vvi4g0263	311	Gene3D	-	42	169	-	-
	Vvi4g0263	311	Pfam	Syntaxin	45	248	IPR006011	GO:0016020
	Vvi4g0263	311	CDD	SNARE_syntaxin1-like	212	274	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi4g0263	Vvi-Chr4	2303750	2304685	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g0263	1	311	SNARE and Associated Proteins	AT1G08560	71.019	1.12e-151	426

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g0263	K08486		-	vvi:100254385	595.89

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