Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0261 ATGGACCACAAACCGCTTCGACACGACGTTGTTTCGCATCAATCCACGACCGATTCCATGAAGCGAAGCAACTCCGAGCTGGACTTTCAGGAGTTCGTCCGGCTCCCGATCTCTCCTGTTGCGGTCGACAACGGAGCTCCGACCTCCAAGCCCGAAATTCGGTCTCCGAAAGCCAGGACTTTCCCGGAACCGGTTGTGCTTTTCGGCGTCGACGAGGACAAAACCTTTGAGGATGTTTGCGCCGGCGATTTCAGCTTCGCTCTCAAGTATGGGGACGCAATGACTGGCTTTTCAGGTTGTGGGGGACTCACGGATCTTCCCTGGTATCAAAACCCCACCCCCAGGAATTCCAGTGTGACAGCTACCATTGATTCCCAGTCCTCCATCTGTGTTGGAACTCCAACTTCATGTAATAAGGCTTTGGGCACAGAAAATCAAGCAAGGGGGGCGACCAGTGGTTCTTCCAGGGAGCTATCAGATGATGAAGACATCGACACAGAGTCTGGTCCATGTGAGGAGAGCACAGATCCTAATAATTTGAAGCGCATGAGAAGGATGGTTTCGAACCGGGAATCTGCCAGGAGATCAAGAAAAAGAAAGCAAGCCCACTTGGCTGATCTTGAGTTGCAGGTTGAACAACTGAGAGGAGAAAATGCATCTCTATACAAGCAGCTAACTGACGCTAGTCAACAGTTCGGTGACGCCAATACAAATAACAGAGTACTTAAATCGGATGTTGAAGCTCTGAGAGCTAAGGTGGAGTTAGTTGAAGGCATGGTTGCTCGAGGCTCCGTCACCAGTAGCCTGAACCATATCCTTCAAACCCATTTGAGCTCACCCCAACTCCTCAGTACTCATAATCTCTGCCGGGTGGCTAATGTCTCACCAACAATCACTGTCCGTGGAGACGACGCCTCATATTCTGGAATGACAATTTCTGGGCATAATTCAGCCGCTCTTGGACTTGAAAATGCTGAAATCCGCAATAGCGAAATCAAGAACAGAGTTATGAGTGATGGTGTGAGCTGTGCTTCAGAGATTTGGCCTTGA 1050 0.499 MDHKPLRHDVVSHQSTTDSMKRSNSELDFQEFVRLPISPVAVDNGAPTSKPEIRSPKARTFPEPVVLFGVDEDKTFEDVCAGDFSFALKYGDAMTGFSGCGGLTDLPWYQNPTPRNSSVTATIDSQSSICVGTPTSCNKALGTENQARGATSGSSRELSDDEDIDTESGPCEESTDPNNLKRMRRMVSNRESARRSRKRKQAHLADLELQVEQLRGENASLYKQLTDASQQFGDANTNNRVLKSDVEALRAKVELVEGMVARGSVTSSLNHILQTHLSSPQLLSTHNLCRVANVSPTITVRGDDASYSGMTISGHNSAALGLENAEIRNSEIKNRVMSDGVSCASEIWP* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0261 349 Pfam bZIP transcription factor 179 227 IPR004827 GO:0003700|GO:0006355
Vvi4g0261 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 231 IPR004827 GO:0003700|GO:0006355
Vvi4g0261 349 MobiDBLite consensus disorder prediction 1 15 - -
Vvi4g0261 349 Gene3D - 180 233 - -
Vvi4g0261 349 PANTHER BASIC LEUCINE ZIPPER 63 15 330 - -
Vvi4g0261 349 MobiDBLite consensus disorder prediction 140 178 - -
Vvi4g0261 349 SMART brlzneu 177 241 IPR004827 GO:0003700|GO:0006355
Vvi4g0261 349 MobiDBLite consensus disorder prediction 140 154 - -
Vvi4g0261 349 SUPERFAMILY Leucine zipper domain 181 230 IPR046347 GO:0003700|GO:0006355
Vvi4g0261 349 Coils Coil 190 231 - -
Vvi4g0261 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Vvi4g0261 349 FunFam BZIP transcription factor 179 230 - -
Vvi4g0261 349 MobiDBLite consensus disorder prediction 1 23 - -
Vvi4g0261 349 CDD bZIP_plant_GBF1 182 232 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0261 Vvi-Chr4 2284330 2286714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0261 124 349 bZIP Transcription Factor Family AT5G24800 55.652 6.39e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi4g0261 bZIP_1 4.7e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0261 K25784 - vvi:100264680 696.427