Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0257 ATGGAGGAAGAGAGGAAGGAGGAAACCTTGCCTCCAGGGTTTCGGTTTCACCCCACCGACGAAGAGCTTATTACTTGTTACCTCATAAACAAGATATCAGATGCTACTTTTACAGGCCGGGCAATTGCAGATGTTGATCTCAACAAATGTGAGCCATGGGAGCTTCCAGGGAAGGCGAAAATGGGAGAAAAGGAGTGGTATTTCTTCAGCCTCAGGGACCGGAAATACCCAACTGGAGTAAGAACAAACCGAGCCACAAACACTGGTTATTGGAAGACCACAGGGAAAGATAAGGAGATTTTCAACAGCGTGACCTCTGAGCTAGTTGGGATGAAGAAGACCTTGGTGTTCTACAGAGGAAGAGCTCCTAGAGGCGAAAAAACCAATTGGGTCATGCACGAATATCGCATCCATTCAAAATCCGCCTTCAGAACTAGCAAGGATGAATGGGTGGTTTGCCGTGTGTTTCAGAAGAGTGCAGCTGGAAAGAAGTACCCATCAAACCAATCAAGGGGGATGAATCCCTACAGCCTTGATATAGGTCCAAGCGTCATGCCCCCACCAATGCTGCAGGCAGATTCTTCCCAGTTCCCCATGGGAAGAAACTACGTAAGTAATGCAGAACTGGCTGAGCTTACAAGGGTCTTAAGAGGAGGATCAACTGGGGGTCTCAACCTACCAATCCAGTCACAATTGAACTACCCATTAGGAGGAGGATGCTTCACGATATCCGGGTTGAATTTAAACCTTGGAGGGACATCCACACAGCCAGTTCTGCGGCCAAATTCTTTGCCTCAGCCCATGCAGATGAATCAACAGGATCATATGATGACTTCCCCCATGCTGACTAGTGGGTCTATCCCTACTGATCAGACTGGGTATGGTGCAGAGGTTAACAATGGAAATGGACACAACAGTAGGTTTATGAATATGGTCGACCATTGTGTGGATCTAGATAACTACTGGCCTCCCTATTAA 978 0.4734 MEEERKEETLPPGFRFHPTDEELITCYLINKISDATFTGRAIADVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFRTSKDEWVVCRVFQKSAAGKKYPSNQSRGMNPYSLDIGPSVMPPPMLQADSSQFPMGRNYVSNAELAELTRVLRGGSTGGLNLPIQSQLNYPLGGGCFTISGLNLNLGGTSTQPVLRPNSLPQPMQMNQQDHMMTSPMLTSGSIPTDQTGYGAEVNNGNGHNSRFMNMVDHCVDLDNYWPPY* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0257 325 FunFam NAC domain-containing protein 100-like 19 162 - -
Vvi4g0257 325 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vvi4g0257 325 SUPERFAMILY NAC domain 7 158 IPR036093 GO:0003677|GO:0006355
Vvi4g0257 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 254 - -
Vvi4g0257 325 ProSiteProfiles NAC domain profile. 10 158 IPR003441 GO:0003677|GO:0006355
Vvi4g0257 325 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0257 Vvi-Chr4 2251198 2253524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0257 2 325 NAC Transcription Factor Family AT2G24430 54.203 1.77e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi4g0257 NAM 3.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0257 - - vvi:100259270 683.715