Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0251 ATGGCAGAAACAGCGACGGCAGCATCGGAATCAGCCGAGGAAGTTCCGGTCCGTGAGCTTTGCGTCAATGGCACTTGCGTGAAAACCGATGAATTCGAGGCCAAACTTGATGAAGGCAACATTGAAGAGGCAGAATCTTCTTTGCGAGAGACATTTTCTCTCAGTTCTGAGGATGCAAGAGCTCTTCTTGGGAAATTGGAGTACCAACGGGGCAAAATGGAAGGTGTTCTTCGTGTTTTTGAAGGCATGGATTTTCAAGCTGCTATTCAGAAGCTACTGCCTCCACCTGATGAAAAAACACCTCCTAGAAAGGCCCGGTCTCGCCCTGGATCAATGCAGGCAGTCTCACAACAACCTGCTGGCCCTGTGATTGAAGCCCTGTACTTGAAATCCAAGTGCCTTCAGAAGCTTGGGAGAACAACTGAGGCTGCTGATGAATGTAGAGGTGTGCTTGATGCTGTGGAAAAGATATTCCCTCTAGGCATACCTGAAGTGCTGGCGGAGAAGAAGCTGCAGGAGATACTTAGCCAAGCGGCAGAGCTGCTTCCTGAGCTTTGGAAGCAGGCTGACAACTACAATGAAGTTATGGCCGCCTACAGACGTGCCCTCCTCAGCCAATGGAATCTTGATAATGATTGTTGCGCGAGGATTCAGAAGCGATTTGCAATGTTCTTGCTGTACAGTGGAGTAGAGGCTGGGCCACCAAGTTTAGCTGCTCAGATTGACGGCTCATATGTACCAAGAAACAATCTTGAGGAAGCTATTCTACTGTTAATGATTCTAACCAGGAAATACTATCTTGGGAAGACGAAATGGGATCAATCAGTAATGGACCATCTTGGATTTGCCCTGTCTCTATGCAGGCAGACTTCTGTTTTAGCAAAGAAGTTTGAAGAGGCCATGCCAGGGGTGTTTCCACGTGATGATCGTTGGAAGGCATTGGCTCTTTGCTATGTTGGAGCAGGAGAAAATGGAGTTTCATTGAATCTATTGAGGAAGTCCTTACACAAAGATGAAAATCCAGACGACCTAGTGACACTGCTATTAGCTGCCAAGATATGTAGTGAGGATTCCCTCCTTGCTGCCGAGGGAGTGGAGTATGCACGGAGGGCAATAAGTAATGCTAATGGGGCTGATGAGCATTTAAAAGGAGTCGGTCTTCGTCTGCTGGGGCTCTGCTTAGGAAAGCAAGCTAGAGTTGCTCCCTCTGATTTTGAGAGGTCTCGTCTTCTGTCTGAGGCGTTGAAGTCACTGGATGGGGCAATAGCTTTGGAGCAAAACAACCCGGATTTGATCTTTGAGTTGGCAGTTCAGTATGCAGAGCACAGGAACTTGAGTGCTGCTTTGCACTATGCCAAGCAGTTCACTGATGCAACAGGAGGGTCCATGGAAAAAGGCTGGAGATTACTCGCTGTGGTCTTGTCCGCTCAACAGCGATATCCCGAGGCAGAAGTGGTCATTGATGCTGCTTTGGATGAGACTGCAAAATGGGAGCAGGGGCCGCTGCTCAGACTGAAAGCCCAGCTGAAGATTGCTCAGTCGTTACCAATGGATGCTATTGAAATCTATCGGTACCTCCTTGCACTAGTTCAAGCACAAAAGAATTCTTTTGGAATCTGGAATGGCCTTGCAAATCTGTACTCCAGCCTTTCACGTTGGAAAGATGCAGAGATATGCTTGGGGAAAGCTATAGAGCTGAAAGATTACTCTGTGGAATCACTGCACCAAAAAGGTGTTATAAGTGAAGGATGTGGCCAAGTAGAAGAAGCTATGAAAGATTATGTTGATGCAATTCTGCTAGATCCGGATTATGTTCCTTGCTTAGTTTTGCTGAGTGCCCTGATGGCGAGGACAAGTACAAAGATGTTGCCTGTTGCCAGAAGCTTACTCTCAGATGCATTGAAGCTACAGCCCACCAACTCTATGGCATGGTATTTCCTGGGAGTGGTTCATAAGAACGATGGGAGAATAGCTGATGCCACAGACTGCTTCCAAGCTGCCTCGATTCTTGAAGAGTCTAATCCCATTGAACGCTTTGGTTCTATGCTGTAA 2052 0.4732 MAETATAASESAEEVPVRELCVNGTCVKTDEFEAKLDEGNIEEAESSLRETFSLSSEDARALLGKLEYQRGKMEGVLRVFEGMDFQAAIQKLLPPPDEKTPPRKARSRPGSMQAVSQQPAGPVIEALYLKSKCLQKLGRTTEAADECRGVLDAVEKIFPLGIPEVLAEKKLQEILSQAAELLPELWKQADNYNEVMAAYRRALLSQWNLDNDCCARIQKRFAMFLLYSGVEAGPPSLAAQIDGSYVPRNNLEEAILLLMILTRKYYLGKTKWDQSVMDHLGFALSLCRQTSVLAKKFEEAMPGVFPRDDRWKALALCYVGAGENGVSLNLLRKSLHKDENPDDLVTLLLAAKICSEDSLLAAEGVEYARRAISNANGADEHLKGVGLRLLGLCLGKQARVAPSDFERSRLLSEALKSLDGAIALEQNNPDLIFELAVQYAEHRNLSAALHYAKQFTDATGGSMEKGWRLLAVVLSAQQRYPEAEVVIDAALDETAKWEQGPLLRLKAQLKIAQSLPMDAIEIYRYLLALVQAQKNSFGIWNGLANLYSSLSRWKDAEICLGKAIELKDYSVESLHQKGVISEGCGQVEEAMKDYVDAILLDPDYVPCLVLLSALMARTSTKMLPVARSLLSDALKLQPTNSMAWYFLGVVHKNDGRIADATDCFQAASILEESNPIERFGSML* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0251 683 SMART tpr_5 537 570 IPR019734 GO:0005515
Vvi4g0251 683 SMART tpr_5 124 157 IPR019734 GO:0005515
Vvi4g0251 683 SMART tpr_5 464 497 IPR019734 GO:0005515
Vvi4g0251 683 SMART tpr_5 571 604 IPR019734 GO:0005515
Vvi4g0251 683 SMART tpr_5 641 674 IPR019734 GO:0005515
Vvi4g0251 683 ProSiteProfiles TPR repeat profile. 641 674 IPR019734 GO:0005515
Vvi4g0251 683 Gene3D Tetratricopeptide repeat domain 282 466 IPR011990 GO:0005515
Vvi4g0251 683 Pfam Tetratricopeptide repeat 572 603 IPR019734 GO:0005515
Vvi4g0251 683 PANTHER PROTEIN NPG1 8 679 IPR043376 -
Vvi4g0251 683 SUPERFAMILY TPR-like 467 674 IPR011990 GO:0005515
Vvi4g0251 683 Gene3D Tetratricopeptide repeat domain 32 213 IPR011990 GO:0005515
Vvi4g0251 683 Gene3D Tetratricopeptide repeat domain 467 678 IPR011990 GO:0005515
Vvi4g0251 683 SUPERFAMILY TPR-like 36 485 IPR011990 GO:0005515
Vvi4g0251 683 Pfam Tetratricopeptide repeat 435 493 - -
Vvi4g0251 683 ProSiteProfiles TPR repeat profile. 571 604 IPR019734 GO:0005515
Vvi4g0251 683 MobiDBLite consensus disorder prediction 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0251 Vvi-Chr4 2193005 2196242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0251 9 683 Calmodulin-binding Proteins AT2G43040 66.092 0.0 884