Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0241 ATGCAGATGTTCTCCAGCCAGTTCGATCCCTTCTCCGGTGGATTCTCGTCATCTCAGTCAACTGATTCCGGCGTTTCGTCGGCCAAAAGTCGTGAAACTCAAGGATTGATCCCAGTGACAGTGAAGCAGATCAGTGAAGCTTCTCATTCCGGTGATGATAAATCCAATTTCCAAATCGACGGTGTGGATGTTACCAATATTACATTGGTTGGAATGGTGTTCGATAAATCTGAAAGGGTTACTGATGTTTCTTTCGCTCTCGATGATGGTACAGGCCGAATAGAGTGTAAAAGATGGGTGAATGAAGCTTTTGACACAAGGGAAATGGAGAACATAAGTGATGGAATTTATGTTCGTCTTAATGGACACCTAAGAAGTTCTGGAGGCAACAGGCAATTGGTTGCCTTTTCAGTGAGGCCTGTGACAAATTTTGATGAGATTGCCTTCCACTTTATTGAGGTCATACATCTCCATCTGAAGAATTCCAAAACACGGCTGCCAAGTGATGCCCTGACTCAGCCTTTGAGTGCCTCTGTGAAGACCGAATCAACTGGATATCAAACCCCATCAAGTCAGTTATCTGCCCAAAGTGTTGATGGAGTCAAAGGACTCGACCAAATGGTTCTTGACTACCTGCAGCAACCTTCAAACTATGATCGAGAAAAGGGCATACACAGGGATGAACTTTCCCAGCAGCTGAAAATTTCTACTGAAAAGATCATGTACTTTCTGTCTCCCCCTCCTTTCTGTATTTAG 756 0.4405 MQMFSSQFDPFSGGFSSSQSTDSGVSSAKSRETQGLIPVTVKQISEASHSGDDKSNFQIDGVDVTNITLVGMVFDKSERVTDVSFALDDGTGRIECKRWVNEAFDTREMENISDGIYVRLNGHLRSSGGNRQLVAFSVRPVTNFDEIAFHFIEVIHLHLKNSKTRLPSDALTQPLSASVKTESTGYQTPSSQLSAQSVDGVKGLDQMVLDYLQQPSNYDREKGIHRDELSQQLKISTEKIMYFLSPPPFCI* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0241 251 Pfam Replication protein A C terminal 156 240 IPR014892 -
Vvi4g0241 251 FunFam replication protein A 32 kDa subunit A-like 29 163 - -
Vvi4g0241 251 CDD RPA2_DBD_D 66 159 - -
Vvi4g0241 251 Gene3D - 33 165 IPR012340 -
Vvi4g0241 251 Gene3D - 195 244 IPR036388 -
Vvi4g0241 251 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g0241 251 PIRSF RPA32 2 244 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi4g0241 251 SUPERFAMILY Nucleic acid-binding proteins 36 163 IPR012340 -
Vvi4g0241 251 PANTHER REPLICATION PROTEIN A-RELATED 10 241 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0241 Vvi-Chr4 2122645 2125343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0241 3 240 Core DNA Replication Machinery Family AT2G24490 50.000 1.28e-76 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0241 K10739 - vvi:100245725 442.58