Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g0238 | ATGGCAACCCTAACTTGCAACGCATGCAATAAGGAGTTCATCGGCGAATCAGACCAGAAGCTCCATTACAAATCCGATTGGCACCGCTACAATCTCAAACGCAAGATTGCTGGGGTTCCAGGGGTGACTGAAGCGTTATATCTAGCTAGACAGTCTTCCCTTGCTGAAGAGAAAAATCGGTTAAATGAGACCCCCATGCTATATAGTTGCAGCCTTTGCGGCAAGGGATACAGAAGTTCCAAGGCTCTTGGTCAGCATCTTAAATCACGAAGTCACATCTTGCGGGCTTCCCAAAGAGCAAGTCATCAAGATGAAGAAACTACAATAATCAAGCCACTAACTCACCGCACTGCAAATAAGCCTCCCCCACAAAGAGAGCCAGTCAATGAAGAAAGTGAAGATGAGTGGGAGGAAGTCAACCCAGATGAAGATTTGGTTGGTGAGGCCACTGAATCCATTACTCAAATGAATGTGAATGAGCATGCATCAAATGATGACATGGATGAAAGTGATGATGACGATGATTTTGAGATAAAATTGGATCCAACCTGTTGCTTCATGTGTGACCAAGAGCAGAACACTATAGAACGTTGTATCGTTCACATGCACAAGCAGCATGGGTTCTTCATTCCTGATGTTGAGTATCTGAAGGATCCAAAAGGACTTCTTACTTATCTTGGCCTTAAGGTGACAAGGGATTTTATGTGTCTGTATTGCAATGACGGATGCCATCCTTTCAACAGCTTGGAAGCGGTTAGGAAGCACATGGTGGCAAAAAGTCACTGCAAAGTGCATTATGGTGATGGTGGTGATGATGAGGAAGCAGAACTGGAAGAGTTCTATGATTATAGTAGCAGTTATGTGGATGTCGATGAGAAACAGCTCGTTGCATCTGGTGACATGAACAACACTGTTGAACTTGGATGTGGTGGATCAGAACTCATCATAACTAGAAGAACTGATGGTGGAATATCAACCAAATCACTTGGATCCCGTGAATTTCTGCGCTATTATCGCCAGAAGCCTCGCCCCTCGCCTATGAATGGTGCTGCCATTACTGCTGCATTGGCCTCTAGGTATAGAAGCATGGGGCTGGCAACAGTGCAGTCAAGAGAGCAGATAGTGAGGATGAAGGTGATGAAGCAGATGAATAAATCCGGGGTAGAAGCCATGCGCTCTAAGATTGGTATGAAGAGTAATGTCATCCGAAACCTCCCCAATAATGTCCCATATTAG | 1236 | 0.4482 | MATLTCNACNKEFIGESDQKLHYKSDWHRYNLKRKIAGVPGVTEALYLARQSSLAEEKNRLNETPMLYSCSLCGKGYRSSKALGQHLKSRSHILRASQRASHQDEETTIIKPLTHRTANKPPPQREPVNEESEDEWEEVNPDEDLVGEATESITQMNVNEHASNDDMDESDDDDDFEIKLDPTCCFMCDQEQNTIERCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVTRDFMCLYCNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGGDDEEAELEEFYDYSSSYVDVDEKQLVASGDMNNTVELGCGGSELIITRRTDGGISTKSLGSREFLRYYRQKPRPSPMNGAAITAALASRYRSMGLATVQSREQIVRMKVMKQMNKSGVEAMRSKIGMKSNVIRNLPNNVPY* | 412 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g0238 | 411 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676|GO:0008270 | |
Vvi4g0238 | 411 | SMART | ZnF_U1_5 | 65 | 99 | IPR003604 | GO:0003676|GO:0008270 | |
Vvi4g0238 | 411 | SMART | c2h2final6 | 68 | 92 | IPR013087 | - | |
Vvi4g0238 | 411 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
Vvi4g0238 | 411 | SMART | c2h2final6 | 234 | 261 | IPR013087 | - | |
Vvi4g0238 | 411 | MobiDBLite | consensus disorder prediction | 97 | 111 | - | - | |
Vvi4g0238 | 411 | Pfam | Zinc-finger double-stranded RNA-binding | 5 | 29 | IPR022755 | - | |
Vvi4g0238 | 411 | PANTHER | ZINC FINGER PROTEIN 622 | 2 | 410 | IPR040025 | - | |
Vvi4g0238 | 411 | MobiDBLite | consensus disorder prediction | 93 | 143 | - | - | |
Vvi4g0238 | 411 | Pfam | Zinc-finger of C2H2 type | 68 | 92 | - | - | |
Vvi4g0238 | 411 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 92 | IPR013087 | - | |
Vvi4g0238 | 411 | Pfam | C2H2 type zinc-finger (2 copies) | 185 | 286 | IPR041661 | - | |
Vvi4g0238 | 411 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 68 | 92 | IPR013087 | - | |
Vvi4g0238 | 411 | SUPERFAMILY | beta-beta-alpha zinc fingers | 67 | 100 | IPR036236 | - | |
Vvi4g0238 | 411 | SUPERFAMILY | beta-beta-alpha zinc fingers | 168 | 242 | IPR036236 | - | |
Vvi4g0238 | 411 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
Vvi4g0238 | 411 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - | |
Vvi4g0238 | 411 | Gene3D | Classic Zinc Finger | 3 | 92 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi4g0238 | 1 | 411 | C2H2 Transcription Factor Family | AT4G31420 | 64.010 | 0.0 | 511 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vvi4g0238 | zf-C2H2_2 | 1.2e-25 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g0238 | K14816 | - | vvi:100256015 | 794.267 |