Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0238 ATGGCAACCCTAACTTGCAACGCATGCAATAAGGAGTTCATCGGCGAATCAGACCAGAAGCTCCATTACAAATCCGATTGGCACCGCTACAATCTCAAACGCAAGATTGCTGGGGTTCCAGGGGTGACTGAAGCGTTATATCTAGCTAGACAGTCTTCCCTTGCTGAAGAGAAAAATCGGTTAAATGAGACCCCCATGCTATATAGTTGCAGCCTTTGCGGCAAGGGATACAGAAGTTCCAAGGCTCTTGGTCAGCATCTTAAATCACGAAGTCACATCTTGCGGGCTTCCCAAAGAGCAAGTCATCAAGATGAAGAAACTACAATAATCAAGCCACTAACTCACCGCACTGCAAATAAGCCTCCCCCACAAAGAGAGCCAGTCAATGAAGAAAGTGAAGATGAGTGGGAGGAAGTCAACCCAGATGAAGATTTGGTTGGTGAGGCCACTGAATCCATTACTCAAATGAATGTGAATGAGCATGCATCAAATGATGACATGGATGAAAGTGATGATGACGATGATTTTGAGATAAAATTGGATCCAACCTGTTGCTTCATGTGTGACCAAGAGCAGAACACTATAGAACGTTGTATCGTTCACATGCACAAGCAGCATGGGTTCTTCATTCCTGATGTTGAGTATCTGAAGGATCCAAAAGGACTTCTTACTTATCTTGGCCTTAAGGTGACAAGGGATTTTATGTGTCTGTATTGCAATGACGGATGCCATCCTTTCAACAGCTTGGAAGCGGTTAGGAAGCACATGGTGGCAAAAAGTCACTGCAAAGTGCATTATGGTGATGGTGGTGATGATGAGGAAGCAGAACTGGAAGAGTTCTATGATTATAGTAGCAGTTATGTGGATGTCGATGAGAAACAGCTCGTTGCATCTGGTGACATGAACAACACTGTTGAACTTGGATGTGGTGGATCAGAACTCATCATAACTAGAAGAACTGATGGTGGAATATCAACCAAATCACTTGGATCCCGTGAATTTCTGCGCTATTATCGCCAGAAGCCTCGCCCCTCGCCTATGAATGGTGCTGCCATTACTGCTGCATTGGCCTCTAGGTATAGAAGCATGGGGCTGGCAACAGTGCAGTCAAGAGAGCAGATAGTGAGGATGAAGGTGATGAAGCAGATGAATAAATCCGGGGTAGAAGCCATGCGCTCTAAGATTGGTATGAAGAGTAATGTCATCCGAAACCTCCCCAATAATGTCCCATATTAG 1236 0.4482 MATLTCNACNKEFIGESDQKLHYKSDWHRYNLKRKIAGVPGVTEALYLARQSSLAEEKNRLNETPMLYSCSLCGKGYRSSKALGQHLKSRSHILRASQRASHQDEETTIIKPLTHRTANKPPPQREPVNEESEDEWEEVNPDEDLVGEATESITQMNVNEHASNDDMDESDDDDDFEIKLDPTCCFMCDQEQNTIERCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVTRDFMCLYCNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGGDDEEAELEEFYDYSSSYVDVDEKQLVASGDMNNTVELGCGGSELIITRRTDGGISTKSLGSREFLRYYRQKPRPSPMNGAAITAALASRYRSMGLATVQSREQIVRMKVMKQMNKSGVEAMRSKIGMKSNVIRNLPNNVPY* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0238 411 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Vvi4g0238 411 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
Vvi4g0238 411 SMART c2h2final6 68 92 IPR013087 -
Vvi4g0238 411 SMART c2h2final6 4 28 IPR013087 -
Vvi4g0238 411 SMART c2h2final6 234 261 IPR013087 -
Vvi4g0238 411 MobiDBLite consensus disorder prediction 97 111 - -
Vvi4g0238 411 Pfam Zinc-finger double-stranded RNA-binding 5 29 IPR022755 -
Vvi4g0238 411 PANTHER ZINC FINGER PROTEIN 622 2 410 IPR040025 -
Vvi4g0238 411 MobiDBLite consensus disorder prediction 93 143 - -
Vvi4g0238 411 Pfam Zinc-finger of C2H2 type 68 92 - -
Vvi4g0238 411 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Vvi4g0238 411 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Vvi4g0238 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 92 IPR013087 -
Vvi4g0238 411 SUPERFAMILY beta-beta-alpha zinc fingers 67 100 IPR036236 -
Vvi4g0238 411 SUPERFAMILY beta-beta-alpha zinc fingers 168 242 IPR036236 -
Vvi4g0238 411 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Vvi4g0238 411 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Vvi4g0238 411 Gene3D Classic Zinc Finger 3 92 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0238 1 411 C2H2 Transcription Factor Family AT4G31420 64.010 0.0 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi4g0238 zf-C2H2_2 1.2e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0238 K14816 - vvi:100256015 794.267