Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g0236 | ATGTCTTCAGACTTCTCTCCTCCGACAGACAACAACTCTGGGGTTGCAGCAGCAGTCATAGTATCGAGCTTGGTGGTAGTAGGAAAAATCGCTGTTATCTATCTCCTTTGTGCAAGGAAAGCAAGGAAGCCCATTGTGAAAGAATTGCAGGCGAGGGAGGTTGATGCACCAACAATGGAGAGGTTCTTCCAAGAAATAGCAAAAGAGAAGCCAGTCAGATTCACTGCTCAACAGCTATGCAGTTTCACTGCTAACTACTCGACAACACTAGGTTCTGGAGGGTTTGGAGTGGTTTACAAAGGGCAGTTCCTGAATGGGGTCAAGATTGCAGTGAAGGTCCTGAATAGGAGTCCAGACAGACAAGCTGGAGAACAGTTCATGGCAGAGGTGGGAACCATAGGCAGAACTTACCATATGAATCTAGTCAGGCTCTATGGGTTCTGCCATGATCAGTTCATGAGTGCACTTGTCTACGAATACCTGGAAAACGGATCCCTGGACAAGTACTTGTTCAGTGAGGCACGAGAAATCGAGTGGGAGAAACTGCATCATATAGCAGTTGGAACAGCAAAGGGCATAGCTTACTTACATGAAGAATGTGTACAAAGAATCATTCACTATGACATAAAACCTGGCAACGTTCTCCTTGATGCTAACTTCTTTCCTAAGGTTGCAGACTTCGGGCTTGCTAAGCTTTGTAACAGGGACAACACCCACCTGACAGTCTCAGGATATAGAGGGACTCCAGGCTATTCGGCCCCAGAATTTTTACTGAAAAACCATCCTATAACCCATAAATGTGATGTTTATAGCTTTGGGATGCTGTTGTTTGAGATAGTTGGGAGGAGGAGGAATGCCAAAATTGGTTCTAATGAGAGCATGGATTGGTTCCCCAAACATGTTTGGGAAGAGTATGAGAAAGGGGATTTAGCAGCAATGACTGTGGCCTGTGGAATTGAAGAGAAGGACAGGGAGAAAGCAGAGAGAATGTCTATGGTGGCTCTATGGTGTGTTCAGGACTCACCCGACTCAAGGCCTCTGATGAGTGCTGTGGTAAAGATGCTGGAGGGAGGAGTAGAAGTCATGCCACCACCAAAACCGTTTCATTATCTATACTCAGTAGGTATAAACGTGTTACAGCAGGCAAATGAAACCGGTACAAGTTCAAGCTATGCAACAAGTAAAGAAACCAATTCAATTTGGTACAAGGAAACCACACCAATCATGGCCAAGTATGAGATACAAGTAGCTAGTTCTTAA | 1260 | 0.45 | MSSDFSPPTDNNSGVAAAVIVSSLVVVGKIAVIYLLCARKARKPIVKELQAREVDAPTMERFFQEIAKEKPVRFTAQQLCSFTANYSTTLGSGGFGVVYKGQFLNGVKIAVKVLNRSPDRQAGEQFMAEVGTIGRTYHMNLVRLYGFCHDQFMSALVYEYLENGSLDKYLFSEAREIEWEKLHHIAVGTAKGIAYLHEECVQRIIHYDIKPGNVLLDANFFPKVADFGLAKLCNRDNTHLTVSGYRGTPGYSAPEFLLKNHPITHKCDVYSFGMLLFEIVGRRRNAKIGSNESMDWFPKHVWEEYEKGDLAAMTVACGIEEKDREKAERMSMVALWCVQDSPDSRPLMSAVVKMLEGGVEVMPPPKPFHYLYSVGINVLQQANETGTSSSYATSKETNSIWYKETTPIMAKYEIQVASS* | 420 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g0236 | 419 | Pfam | Protein tyrosine and serine/threonine kinase | 87 | 355 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi4g0236 | 419 | Gene3D | Transferase(Phosphotransferase) domain 1 | 161 | 361 | - | - | |
Vvi4g0236 | 419 | SMART | serkin_6 | 84 | 355 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi4g0236 | 419 | ProSitePatterns | Protein kinases ATP-binding region signature. | 90 | 112 | IPR017441 | GO:0005524 | |
Vvi4g0236 | 419 | Gene3D | Phosphorylase Kinase; domain 1 | 28 | 160 | - | - | |
Vvi4g0236 | 419 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 161 | 365 | - | - | |
Vvi4g0236 | 419 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 204 | 216 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi4g0236 | 419 | SUPERFAMILY | Protein kinase-like (PK-like) | 74 | 379 | IPR011009 | - | |
Vvi4g0236 | 419 | ProSiteProfiles | Protein kinase domain profile. | 84 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi4g0236 | 419 | PANTHER | OS07G0415500 PROTEIN | 11 | 368 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi4g0236 | Vvi-Chr4 | 2074841 | 2076177 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi4g0236 | 73 | 387 | Receptor kinase-like Gene Family | AT5G38280 | 40.248 | 3.49e-82 | 264 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-Os | Vvi4g0236 | PK_Tyr_Ser-Thr | 3.6e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g0236 | - | - | vvi:100261100 | 841.647 |