Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0236 ATGTCTTCAGACTTCTCTCCTCCGACAGACAACAACTCTGGGGTTGCAGCAGCAGTCATAGTATCGAGCTTGGTGGTAGTAGGAAAAATCGCTGTTATCTATCTCCTTTGTGCAAGGAAAGCAAGGAAGCCCATTGTGAAAGAATTGCAGGCGAGGGAGGTTGATGCACCAACAATGGAGAGGTTCTTCCAAGAAATAGCAAAAGAGAAGCCAGTCAGATTCACTGCTCAACAGCTATGCAGTTTCACTGCTAACTACTCGACAACACTAGGTTCTGGAGGGTTTGGAGTGGTTTACAAAGGGCAGTTCCTGAATGGGGTCAAGATTGCAGTGAAGGTCCTGAATAGGAGTCCAGACAGACAAGCTGGAGAACAGTTCATGGCAGAGGTGGGAACCATAGGCAGAACTTACCATATGAATCTAGTCAGGCTCTATGGGTTCTGCCATGATCAGTTCATGAGTGCACTTGTCTACGAATACCTGGAAAACGGATCCCTGGACAAGTACTTGTTCAGTGAGGCACGAGAAATCGAGTGGGAGAAACTGCATCATATAGCAGTTGGAACAGCAAAGGGCATAGCTTACTTACATGAAGAATGTGTACAAAGAATCATTCACTATGACATAAAACCTGGCAACGTTCTCCTTGATGCTAACTTCTTTCCTAAGGTTGCAGACTTCGGGCTTGCTAAGCTTTGTAACAGGGACAACACCCACCTGACAGTCTCAGGATATAGAGGGACTCCAGGCTATTCGGCCCCAGAATTTTTACTGAAAAACCATCCTATAACCCATAAATGTGATGTTTATAGCTTTGGGATGCTGTTGTTTGAGATAGTTGGGAGGAGGAGGAATGCCAAAATTGGTTCTAATGAGAGCATGGATTGGTTCCCCAAACATGTTTGGGAAGAGTATGAGAAAGGGGATTTAGCAGCAATGACTGTGGCCTGTGGAATTGAAGAGAAGGACAGGGAGAAAGCAGAGAGAATGTCTATGGTGGCTCTATGGTGTGTTCAGGACTCACCCGACTCAAGGCCTCTGATGAGTGCTGTGGTAAAGATGCTGGAGGGAGGAGTAGAAGTCATGCCACCACCAAAACCGTTTCATTATCTATACTCAGTAGGTATAAACGTGTTACAGCAGGCAAATGAAACCGGTACAAGTTCAAGCTATGCAACAAGTAAAGAAACCAATTCAATTTGGTACAAGGAAACCACACCAATCATGGCCAAGTATGAGATACAAGTAGCTAGTTCTTAA 1260 0.45 MSSDFSPPTDNNSGVAAAVIVSSLVVVGKIAVIYLLCARKARKPIVKELQAREVDAPTMERFFQEIAKEKPVRFTAQQLCSFTANYSTTLGSGGFGVVYKGQFLNGVKIAVKVLNRSPDRQAGEQFMAEVGTIGRTYHMNLVRLYGFCHDQFMSALVYEYLENGSLDKYLFSEAREIEWEKLHHIAVGTAKGIAYLHEECVQRIIHYDIKPGNVLLDANFFPKVADFGLAKLCNRDNTHLTVSGYRGTPGYSAPEFLLKNHPITHKCDVYSFGMLLFEIVGRRRNAKIGSNESMDWFPKHVWEEYEKGDLAAMTVACGIEEKDREKAERMSMVALWCVQDSPDSRPLMSAVVKMLEGGVEVMPPPKPFHYLYSVGINVLQQANETGTSSSYATSKETNSIWYKETTPIMAKYEIQVASS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0236 419 Pfam Protein tyrosine and serine/threonine kinase 87 355 IPR001245 GO:0004672|GO:0006468
Vvi4g0236 419 Gene3D Transferase(Phosphotransferase) domain 1 161 361 - -
Vvi4g0236 419 SMART serkin_6 84 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0236 419 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Vvi4g0236 419 Gene3D Phosphorylase Kinase; domain 1 28 160 - -
Vvi4g0236 419 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 161 365 - -
Vvi4g0236 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vvi4g0236 419 SUPERFAMILY Protein kinase-like (PK-like) 74 379 IPR011009 -
Vvi4g0236 419 ProSiteProfiles Protein kinase domain profile. 84 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0236 419 PANTHER OS07G0415500 PROTEIN 11 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0236 Vvi-Chr4 2074841 2076177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0236 73 387 Receptor kinase-like Gene Family AT5G38280 40.248 3.49e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi4g0236 PK_Tyr_Ser-Thr 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0236 - - vvi:100261100 841.647