Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0235 ATGTCTTCATATGACTACTCTCCTCCAAGCAACAACTCTGGGATTACAGCAGGAGCCGTAATATTGAGCTTGGTGGTGCTTGGAATTATCGCTGTTATCTCTCTCGTTTGTGCAAGGAAAGCGAAGAAGGCTATTGTGACAGAATTGCAAGCGGCAGTGGCTCCCCCACCTGTGAATACGATACAGGTTTGGGAGGTTGATACACCAACAATGGAGAAGTTCTTCCAAGAATTAGCGAGGGAGAAGCCGGTCAGGTTCACTGCTCAGCAGCTATGCAGCTTCACTGATAACTACACCACAACACTGGGTTCTGGAGGGTTTGGAATGGTTTACAAGGGGCAGTTCCCCAATGGGGTCAAGATTGCAGTGAAGGTCCTGAATAGGAGTCCAGACAGACAAGCTGAAGAACAGTTCATGGCAGAGGTGGGAACCATAGGCAGGACTTACCATATCAATCTAGTCAGGCTCTATGGTTTCTGCTATGATCAGTTCATGAGCGCACTTGTCTACGAATACCTGGAAAATGGATCCCTGGACAAGTACTTGTTCAGCGAGGCACAAGAAGTCGAGTGGGAGAAGCTGCATCATATAGCAGTTGGGACAGCAAAGGGCATAGCTTACTTACATGAAGAATGTGTAGAAAGAATCATTCACTATGACATAAAACCCGGTAACATTCTTCTTGATGCTAACTTCTTTCCTAAGGTTGCAGACTTTGGGCTTGCTAAGCTTTGTAACAGGGACGGCACCCACCTGACAGTCTCAGGATATAGAGGGACTCCAGGCTACTCAGCACCAGAATTTTTACTGAAAAACCATCCCATAACCCATAAGTGTGATGTTTATAGCTTTGGGATGCTGTTGTTTGAGATAGTTGGGAGGAGGAGGAATGCCAAAGTTGGTTCTAATGAGAGCATGGATTGGTTCCCCAAACATACTTGGGAAGAGTATGAGAAAGGGGATTTAGCAGCAATGACTGTGGCCTGTGGAATTGAAGAGAAGGACAGGGAGAAAGCAGAGAGAATGTCTATGGTGGCTCTATGGTGTGTTCAGGACTCACCAGACTCGAGGCCTCCAATGAGTGCTGTGGTAAAGATGCTCGAGGGAGGAGTAGAAGTCATGCCGCCGCCAAAACCATTTCATTATCTATACTCAGTAGGGATGAACGTGTTCCAGCAGGCAAATGAAACTGGTACGAATTCAAGCTATGCGACAAGTGAAGAAACCAGTTCAATTTGGTACAAGGAAACCACCCCAATCATGGCCAAGTATGAGATACAAGTAGCTAGTTCTTAA 1296 0.4622 MSSYDYSPPSNNSGITAGAVILSLVVLGIIAVISLVCARKAKKAIVTELQAAVAPPPVNTIQVWEVDTPTMEKFFQELAREKPVRFTAQQLCSFTDNYTTTLGSGGFGMVYKGQFPNGVKIAVKVLNRSPDRQAEEQFMAEVGTIGRTYHINLVRLYGFCYDQFMSALVYEYLENGSLDKYLFSEAQEVEWEKLHHIAVGTAKGIAYLHEECVERIIHYDIKPGNILLDANFFPKVADFGLAKLCNRDGTHLTVSGYRGTPGYSAPEFLLKNHPITHKCDVYSFGMLLFEIVGRRRNAKVGSNESMDWFPKHTWEEYEKGDLAAMTVACGIEEKDREKAERMSMVALWCVQDSPDSRPPMSAVVKMLEGGVEVMPPPKPFHYLYSVGMNVFQQANETGTNSSYATSEETSSIWYKETTPIMAKYEIQVASS* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0235 431 ProSiteProfiles Protein kinase domain profile. 96 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0235 431 SUPERFAMILY Protein kinase-like (PK-like) 86 397 IPR011009 -
Vvi4g0235 431 Gene3D Phosphorylase Kinase; domain 1 69 172 - -
Vvi4g0235 431 PANTHER OS07G0415500 PROTEIN 18 380 - -
Vvi4g0235 431 FunFam serine/threonine-protein kinase PBS1-like 65 172 - -
Vvi4g0235 431 SMART serkin_6 96 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0235 431 ProSitePatterns Protein kinases ATP-binding region signature. 102 124 IPR017441 GO:0005524
Vvi4g0235 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vvi4g0235 431 Pfam Protein tyrosine and serine/threonine kinase 99 367 IPR001245 GO:0004672|GO:0006468
Vvi4g0235 431 Gene3D Transferase(Phosphotransferase) domain 1 173 373 - -
Vvi4g0235 431 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 173 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0235 Vvi-Chr4 2071420 2072813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0235 85 382 Receptor kinase-like Gene Family AT5G38280 42.295 3.20e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi4g0235 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0235 - - vvi:100266306 876.315