Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0233 ATGGAGTGGGACAGCAATTCGGAGGAGGGCAGCGGAGGCGAGGACGAAGAGGGATTCTTGCTCAGTGATGGTGGTCCGCTGCCGTTCTCCGCCGGGAGTTTGCTCGAAACGGCGCCATGTGGGTTTGTGGTGTCCGACGCTTTGGAGCCCGACTTCCCCATTATATATGTGAACACTGGGTTTGAACTCGTTACTGGGTATAGAGCTGAGGAAATTCTGGGTCGGAATTGCCGTTTCCTCCAATGTAGAGGACCTTTTGCTAAAAGAAGACATCAACTGGTGGACTCCACTGTAGTTTCAGAAATTCGTAGATGCCTTGAGCTTGGGGTAGAATTCCAAGGGGATTTATTAAACTTCAGAAAAGATGGGTCTCCATTGATGAACAGACTGCGGCTGACGCCAATTTATGGGGATGACAAAACCATAACCCATGTTATTGGTATTCAGTTCTTTACAGAAGCAAATCTTGATCTGGGGCCGCTTCCGGGATCTGTTACCAAGGAGTCTTACAGATCTTTTGACCGATTCTCTTCTGATCTCATGTCTTCCCGCTCTATTCCATCTGGGAGTGTAAATGCTGGTCATGAAGTTTGTGAGATGTTTCAACTGAGCGATGAAGTATTGTCTCACAAGATACTCTCTCGGTTGACACCTAGGGACATTGCTTCCGTTGCTTCTGTATGTAAACGACTTTATCAGTTAACAAAGAATGAGGATCTTTGGAGATTGGTTTGCCAAAATGCATGGGGCTGTGAAACAACTAGGGTTTTAGAGACAGTGCCTGGGGCAAAGAGACTAGGGTGGGTCCGACTAGCTAGGGAATTAACAACTCTTGAAGCTGCTGCATGGAGGAAGCTAACAGTTGGAGGTGCTGTGGAGCCTTCTCGTTGCAATTTCAGTGCATGTGCTGTTGGGAATCGCGTTGTTCTCTTTGGTGGTGAAGGGGTTAACATGCAACCAATGAATGACACATTTGTATTGGATTTAAATGCTACTAACCCTGAATGGCAACATGTTAAGCATCCTACATGGCGTGAGATTTCAGGATTGGCCCCACCACTTCCCAGATCCTGGCACAGCTCCTGCACTCTGGATGGCACTAAGTTAGTAGTTTCAGGTGGTTGTGCAGACTCTGGAGTCCTTCTCAGTGACACTTTTCTGCTTGATCTTGCAACGATTGAGAAACCTGTCTGGAGAGAGATTCCAGTTGCATGGACCCCACCTTCTCGTTTGGGTCACTCACTCTCGGTTTATGGAGGCAGGAAGATTTTGATGTTTGGCGGTCTAGCCAAGAGTGGGCCTCTTCGGTTCCGCTCCAGTGATGTTTTTACTATGGATCTTAGCGAAGAAGAACCATGCTGGAGATGTGTAACTGGAAGTGGGATGCCTGGTTCTGGAAATCCAGCTGGTACAGCTCCTCCTCCTCGCCTTGATCATGTGGCCGTGAGCCTTCCAGGTGGCAGGATTCTGATCTTTGGTGGTTCTGTAGCTGGTCTTCACTCTGCATCTCAGTCATATCTACTGGACCCAACTGATGAGAAACCTACTTGGAGAATATTAAATGTGCCCGGGCGCCCCCCAAGATTTGCTTGGGGGCATAGTACATGTGTTGTTGGAGGAACAAGAGCTATAGTGCTTGGAGGACAAACTGGAGAGGAGTGGATGCTGAGCGAGCTCCATGAGCTTTCATTGGCGAGTTACGTTGTGTGA 1710 0.483 MEWDSNSEEGSGGEDEEGFLLSDGGPLPFSAGSLLETAPCGFVVSDALEPDFPIIYVNTGFELVTGYRAEEILGRNCRFLQCRGPFAKRRHQLVDSTVVSEIRRCLELGVEFQGDLLNFRKDGSPLMNRLRLTPIYGDDKTITHVIGIQFFTEANLDLGPLPGSVTKESYRSFDRFSSDLMSSRSIPSGSVNAGHEVCEMFQLSDEVLSHKILSRLTPRDIASVASVCKRLYQLTKNEDLWRLVCQNAWGCETTRVLETVPGAKRLGWVRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNATNPEWQHVKHPTWREISGLAPPLPRSWHSSCTLDGTKLVVSGGCADSGVLLSDTFLLDLATIEKPVWREIPVAWTPPSRLGHSLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGSGNPAGTAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQSYLLDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASYVV* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0233 569 ProSiteProfiles PAS repeat profile. 34 76 IPR000014 -
Vvi4g0233 569 Pfam Kelch motif 477 524 IPR011498 GO:0005515
Vvi4g0233 569 Pfam Kelch motif 410 461 IPR011498 GO:0005515
Vvi4g0233 569 FunFam Adagio protein 1 197 244 - -
Vvi4g0233 569 Gene3D PAS domain 24 160 - -
Vvi4g0233 569 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 30 340 - -
Vvi4g0233 569 SUPERFAMILY F-box domain 187 262 IPR036047 GO:0005515
Vvi4g0233 569 Pfam PAS domain 39 149 IPR000014 -
Vvi4g0233 569 SUPERFAMILY Kelch motif 283 563 IPR015915 GO:0005515
Vvi4g0233 569 FunFam Putative LOV domain-containing protein 433 568 - -
Vvi4g0233 569 FunFam Adagio protein 1 29 160 - -
Vvi4g0233 569 Gene3D - 196 244 - -
Vvi4g0233 569 CDD F-box_AtADO-like 200 245 - -
Vvi4g0233 569 CDD PAS 38 148 IPR000014 -
Vvi4g0233 569 Pfam F-box-like 210 246 IPR001810 GO:0005515
Vvi4g0233 569 NCBIfam PAS domain S-box protein 34 148 IPR000014 -
Vvi4g0233 569 SMART fbox_2 203 244 IPR001810 GO:0005515
Vvi4g0233 569 Pfam Galactose oxidase, central domain 355 392 - -
Vvi4g0233 569 Pfam Galactose oxidase, central domain 296 339 - -
Vvi4g0233 569 Gene3D - 469 568 IPR015915 GO:0005515
Vvi4g0233 569 Gene3D - 272 468 IPR015915 GO:0005515
Vvi4g0233 569 SUPERFAMILY PYP-like sensor domain (PAS domain) 34 149 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0233 Vvi-Chr4 2060328 2064473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0233 32 200 AGC Kinase Gene Family AT5G58140 29.586 2.31e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0233 K12115 - vvi:100249144 745.347