Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0224 ATGGATGAATATTCTGGTAAAAGAGCCATTAATGAGCTTGTTGTCTCTAGAAAGGGATCAGGTCTTAGACCAGGTGTTATTTTGAGAGATACAGCCAACAACAGAGATCGGAATGCGCAATTCTGCAACCGACTTGGATGCAGAGGCAGATTGAACTCCATGAAAGGTACCCAACTTGGCAGTTTGGAGAAGCCCAAATCTTCAAGACCTTCATCCTTTACTTCTTCAAGTGGAAAAGAAATAATTGGAAGTTCCTCTAGTACTGGCCCTTCAGTGAGAAAATCCCTTCAGACACCTCGGAAAAAGCTATCTGCTCATCTAGAAACAGATTCATCTGAAACTAGTAGTGTTCCAGATGAGTCAGAAGTCTTAGAGCTCATTCCCCCACCTGGAAAGATTCAGAGAGGGCATCACCCCAAAGCAGACGATACTGAGTCTTCCGAAATCACACCTATGGAAGTGGGTAGCTCTAGTATTGCTTCAAATACAAGACCTCGAAGGAATTTTCATCAAAAATCTGGCTTTACTAACCAAGCTACTCTGATGGGTTCCTCTGTTGCATTGGCATCTAAAACTGCTGGTCAAGTAGCAAGACATGGTGCAAACGCAAGCAGGTATGGTTTGAGAAATCTAAGATGCAATTCAATTTCTGATGCAATGCCATCATGTTCATCATCTGAATCAAACCTTACTAGAAAGAAGGACATTGGAAAAAAGAGACTTTCTGAAATAGAAAGTAGTTCCTCTGCTAGAGGCAAGAAGAGTGGTGGGCCATCATCAGAATATGGACGGAATTCTATTTCTAGTTATGGTGTCTCCATTTCTGATTCCAGACGATCCAGAAATTGGACTCCTAGCAGGGATAACGGTGTTGCATCCGTTAGGACTCGGAGGTCAATCAATGGTAATACTAGTAGGCCATCATCCTCTAATCAAGGAATTCGAAACAATTTATTGCCGACTGAGCCCTCCATTACAATCCCACAAATGCCCCAACCTGAAATATCTATTGGGGCAAATGATCCCAGCTTGTCACATCAGTTCTCCATAGGATCTCCCTCAAGCTTCCTGAATTCTTACAGTCAATCAGATAGTAGCAGTGAGAATTTACATAGTATTATGCCCATAAGTCCCACAGAAGTTGGTATCTCACGCTCTTCAATGAATCGGGATAGCCTGCGACGCTATAACATGGATGGGATTGCAGAGGTAGAAATTTTTTTTATGACATTTGCACAGGTATTATTGGCTCTAGAGAGGATTGAGCAAGATGAAGAACTAACATATGAGCAATTACTTGTTCTGGAGACAAATTTGTTCCTTGGTGGCTTAAGCTTCCATGATCAGCACAGAGAGATGAGACTAGATATAGATAACATGTCATATGAGGAATTATTGGCTCTAGAGGAGAAGATGGGTACTGTGAGCACAGCACTTACAGAAGAAGCATTGTCAAAATGCCTTGAGAGAAGCATCTATCACACACTGCCTACAGAACCAGGGACCATGGATTGTGCTGGGGATGGTGATGATGTCAAATGCAGTATTTGTCAGGAAGAGTACATGGTTGGGGATGAAGTGGGGAAATTGCAATGCGAGCATGGGTATCATGTGGCCTGTATACACCAGTGGCTACGGCTGAAGAATTGGTGCCCTGTCTGCAAGGCTTCAGCTGCACTTTAA 1683 0.429 MDEYSGKRAINELVVSRKGSGLRPGVILRDTANNRDRNAQFCNRLGCRGRLNSMKGTQLGSLEKPKSSRPSSFTSSSGKEIIGSSSSTGPSVRKSLQTPRKKLSAHLETDSSETSSVPDESEVLELIPPPGKIQRGHHPKADDTESSEITPMEVGSSSIASNTRPRRNFHQKSGFTNQATLMGSSVALASKTAGQVARHGANASRYGLRNLRCNSISDAMPSCSSSESNLTRKKDIGKKRLSEIESSSSARGKKSGGPSSEYGRNSISSYGVSISDSRRSRNWTPSRDNGVASVRTRRSINGNTSRPSSSNQGIRNNLLPTEPSITIPQMPQPEISIGANDPSLSHQFSIGSPSSFLNSYSQSDSSSENLHSIMPISPTEVGISRSSMNRDSLRRYNMDGIAEVEIFFMTFAQVLLALERIEQDEELTYEQLLVLETNLFLGGLSFHDQHREMRLDIDNMSYEELLALEEKMGTVSTALTEEALSKCLERSIYHTLPTEPGTMDCAGDGDDVKCSICQEEYMVGDEVGKLQCEHGYHVACIHQWLRLKNWCPVCKASAAL* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0224 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 559 IPR013083 -
Vvi4g0224 560 MobiDBLite consensus disorder prediction 248 344 - -
Vvi4g0224 560 MobiDBLite consensus disorder prediction 50 170 - -
Vvi4g0224 560 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 75 559 IPR045191 GO:0061630
Vvi4g0224 560 MobiDBLite consensus disorder prediction 54 98 - -
Vvi4g0224 560 FunFam E3 ubiquitin-protein ligase arkadia 476 560 - -
Vvi4g0224 560 SUPERFAMILY RING/U-box 509 557 - -
Vvi4g0224 560 ProSiteProfiles Zinc finger RING-type profile. 514 555 IPR001841 -
Vvi4g0224 560 MobiDBLite consensus disorder prediction 149 170 - -
Vvi4g0224 560 MobiDBLite consensus disorder prediction 218 344 - -
Vvi4g0224 560 SMART ring_2 514 554 IPR001841 -
Vvi4g0224 560 MobiDBLite consensus disorder prediction 231 247 - -
Vvi4g0224 560 Pfam Ring finger domain 513 555 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0224 Vvi-Chr4 1972606 1975604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0224 413 558 C3H Transcription Factor Family AT2G15530 44.521 8.44e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0224 - - vvi:100245643 1042.72