Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0214 ATGGCGTCGTCGTCAGAGGAGAACTTGAAGCAACAATTGCAGGAATTGCAGAAACAGCTTGGGAAGAAGCAGATGTTCGAGGAAGCCGTTTTATCGATTAAGTCTCTGCTTGTTGACCACTACTCTTCTTCTTCACCTTCTCTGCGAAAATTGTTTTATTCAGTTGTATGCCGGGTTGCTACTATTTTGAGGACCAGATACACTGCTCCCGGGTTCTGGCTTTCTGGGCTAAGGCTTTTTGAGCAGGCTGAATCCATGGTGACTGATTCTTCTGAGAAGGAGAACTTGAAGAGTTGCATTGCTGGTGCTAGGCAGCAGCTGAACCATGTAGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCAATGGCTGGTGCAATCTAACAACCTCTTGACAGCTGCTGCTACACTTTCTAACTTAGAATCAGCCAATGGTCTTACAGAAAATAATAATATCACATCAGAAAATGCTGCTAGTATACTTTTGCAGCTGATGGATGACCTTCAGGATATTGTGCCTGAGATCCTGGACAATGATACTAGAGCCCCAAGAGTACCACCTGCCAGTAAAGAAGTGGTGGCGAATCTCCCAGTTATTACTCTTACAGAAGACGCCTTATCAAAGCTCAGTGGTGATGCAGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGATCGTGCCTATGAGAGCTGGAAGCAGAGGGAGAAGGAGGCGGAAGAAGAGAGGAAAGGGGCTGCAAATGCAGTTCGAGGGGGTGAATACATGTATGTTTAG 954 0.4612 MASSSEENLKQQLQELQKQLGKKQMFEEAVLSIKSLLVDHYSSSSPSLRKLFYSVVCRVATILRTRYTAPGFWLSGLRLFEQAESMVTDSSEKENLKSCIAGARQQLNHVENLSEASETTENRANRGYLFEGHLTVDPEPPRPQWLVQSNNLLTAAATLSNLESANGLTENNNITSENAASILLQLMDDLQDIVPEILDNDTRAPRVPPASKEVVANLPVITLTEDALSKLSGDAECAICKENFVVDDKMQELPCKHTFHPPCLKPWLDKHNSCPICRHELLTDDRAYESWKQREKEAEEERKGAANAVRGGEYMYV* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0214 317 Coils Coil 288 308 - -
Vvi4g0214 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 283 IPR013083 -
Vvi4g0214 317 SMART ring_2 237 277 IPR001841 -
Vvi4g0214 317 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Vvi4g0214 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 117 281 - -
Vvi4g0214 317 FunFam E3 ubiquitin-protein ligase RNF181 198 284 - -
Vvi4g0214 317 SUPERFAMILY RING/U-box 231 284 - -
Vvi4g0214 317 Pfam Ring finger domain 236 278 IPR001841 -
Vvi4g0214 317 CDD RING-H2_RNF126-like 236 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0214 Vvi-Chr4 1889536 1891770 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0214 9 317 C3H Transcription Factor Family AT5G20910 65.049 1.00e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0214 K16274 - vvi:100247386 576.63