Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0208 ATGGTAAAGCCGACCGCCGCAACAGCCACCACTACCTCCGAAGGGGGACAGCCGGGGAACTCGGAGACGAAATACAAGGGAGTGCGGAAGAGGAAATGGGGGAAGTGGGTGTCAGAAATACGGCTCCCCAACAGCCGAGAGAGGATTTGGCTGGGCTCCTACGACACGCCAGAGAAGGCGGCGCGGGCATTCGACGCTGCCCTCTTTTGTCTCCGCGGCCACGGCGCCAAGTTCAACTTCCCCGACAACCCTCCGGATATCCCCGGTCGGGAGTCTCTCACTCCCTCGGAGATCCAACTGGTCGCCGCGAGATTCGCCAACGAAGAACCGCCGAAAGAATGCTCGGAGTTGGAGTCGCAGCACTCGCAGTCGGAGTCGCACCACTACAACTACACGCCGTCTTGTTCGTTGTCGGAACAGTTGGAGAACGAAACGATAATGGACGGATCGTTTTGGAGCATAAGGGACTACAGCTATATCGATGGCGGTGGACTCGGGATTTCTCCGCCAAGCCCGATGGATGAGAGTGGCGGCGAAGAGTTTTTTCAGCAGTCGTCATTCCTCTGGAACTTCTGA 576 0.5799 MVKPTAATATTTSEGGQPGNSETKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALFCLRGHGAKFNFPDNPPDIPGRESLTPSEIQLVAARFANEEPPKECSELESQHSQSESHHYNYTPSCSLSEQLENETIMDGSFWSIRDYSYIDGGGLGISPPSPMDESGGEEFFQQSSFLWNF* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0208 191 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g0208 191 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Vvi4g0208 191 MobiDBLite consensus disorder prediction 109 123 - -
Vvi4g0208 191 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g0208 191 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vvi4g0208 191 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Vvi4g0208 191 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vvi4g0208 191 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vvi4g0208 191 MobiDBLite consensus disorder prediction 109 129 - -
Vvi4g0208 191 Pfam AP2 domain 23 74 IPR001471 GO:0003700|GO:0006355
Vvi4g0208 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 138 - -
Vvi4g0208 191 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Vvi4g0208 191 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vvi4g0208 191 FunFam Ethylene-responsive transcription factor 2 23 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0208 Vvi-Chr4 1834172 1834747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0208 16 191 AP2-EREBP Transcription Factor Family AT1G19210 49.457 1.45e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi4g0208 AP2 6.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0208 - - vvi:100250941 375.555