Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0203 ATGGGCGGCGGTGGCGGTGGAGCAGGGACAGTGGAGGTGATAAGTAGCAAAGGGTGTTCAAGGCTCTTGGTGGGGATTTCGTCTTCATTGCCGCCGATGAGAGGTCTCAAGACATTTGAGCCAATGTCTCCGGCTTCATCGTCTGTGGGTCGATCCAATGGCCCTTTTTCTGGGCTCGTGATATGCGTCACAGGTCTCTCCAAAGAAGCAAGGAAACAAGTGATGGACGCCGCCGAGCGATTAGGTGGCCAATACAGTCCTAATTTGCATCCTCAATGCACCCATCTGGTGGTCCAAAGCTTTGGTGGACGCAAGTTAGACCATGCTCTGAAGCATGGATCAAAAAATGGTCTTTTTGTTGTTACACTTGGATGGTTTGTAGATAGCGTTCGAAGGAACGTCAGATTGAGCGAATCCCTTTATTATGTTAAGAATGTGGGAGAAAATGGTGTACGCATGGATGAATTGAATCGCCTCATTGGTTTTTCTGGTGCTGAAAATTCTTGCCTTCCTGCTGGTATGTTTGAAAATGCCAAGCAATCTGTCATGACCGAGGACCCACATTTGTGGTTCTCTGGGAGAGAGTCTAAAAGAAGTGTGGACTCAACACTATCTGGTCACTCAATGTTCATTGATTCAGATATCTCAGCTGAGCTGCGGAATAAGGTTGTTGAGGCTGCTGCAAGAGGAGGTGCCATGCTTGTAGACCAATGGTTTGTTGGTTGCAATGCGAATTATGTTGTGTGTGAAGGGCCTTCTATACAAAGATATCTTGGGCATTCCAACAATCTTGTTACGCCACTGTGGATTCTGAAAACGGCAAAGGAGAGATATGCACAAAGGCTTGTTCACATGTCTGCTGATTTGGCTAGGCAGGTTGGAATGGTGCTTGAAAATGTTCAAAACGGAATTGAATTGGAGGAAATGAACAGGGAAAATGGTCCTCAAGACACTCCCTGTCCTAGAAAGAAAGCAAGCCACGAAGAAAGGCAAGAGATTGTGAGTTTAGCGAAAGCAGGGGTTAGAAACCGCCGTGCTCGGTATATGCAGACATGTCAAACCCCAATTCGTCCAATAAACCCAAGCAGCCTTCTCGATTCAATCTGCTGGTCAATATCTGAGCCAACCTCAACTGCTTCTATTTACACAGAATCATCCAGTGTAGGAGATGTTAGCGAACACCAAACATCTGTGTTCTTTGATGCCAAAGGAGATGGCAAAGAGTCAGAAGCCTCTTTTGCAAACTTCTCCCGGCTACTTACAGAAAGCGAGAAAGCTGAGCTAATATTCAAAGGCCACTTCCTTACTATACTGCTCCCCGTCGACAGATTTGCTGAGATGGGTCCTTCTTCAAGAACGTTTTTCAGCAGTAAAGGTTTTACCTGTCTGCAGGTGTTGGACCATATCTATGCATTTTATCAGGAGAACATGACGCTTCATGAAATAGAAGCTGCCATTCATACTGACTCGAGGCATGCTGACAGACTCCGATCAGTGTATTCGAGCAAGGAGACAGGGGAGAGAGGTTATGCAATTTTCAAACGCATCGATTTCTTAGGCAGTCGTAAGAGTTTTGAAATGTTGAAACGGGTGAGTGGTGACAACAATAGTAATGTATATGAACTGGTGATTAGAGCGTAA 1641 0.4564 MGGGGGGAGTVEVISSKGCSRLLVGISSSLPPMRGLKTFEPMSPASSSVGRSNGPFSGLVICVTGLSKEARKQVMDAAERLGGQYSPNLHPQCTHLVVQSFGGRKLDHALKHGSKNGLFVVTLGWFVDSVRRNVRLSESLYYVKNVGENGVRMDELNRLIGFSGAENSCLPAGMFENAKQSVMTEDPHLWFSGRESKRSVDSTLSGHSMFIDSDISAELRNKVVEAAARGGAMLVDQWFVGCNANYVVCEGPSIQRYLGHSNNLVTPLWILKTAKERYAQRLVHMSADLARQVGMVLENVQNGIELEEMNRENGPQDTPCPRKKASHEERQEIVSLAKAGVRNRRARYMQTCQTPIRPINPSSLLDSICWSISEPTSTASIYTESSSVGDVSEHQTSVFFDAKGDGKESEASFANFSRLLTESEKAELIFKGHFLTILLPVDRFAEMGPSSRTFFSSKGFTCLQVLDHIYAFYQENMTLHEIEAAIHTDSRHADRLRSVYSSKETGERGYAIFKRIDFLGSRKSFEMLKRVSGDNNSNVYELVIRA* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0203 546 Pfam twin BRCT domain 59 125 IPR001357 -
Vvi4g0203 546 Pfam Family of unknown function (DUF6699) 456 530 IPR046522 -
Vvi4g0203 546 SUPERFAMILY BRCT domain 53 144 IPR036420 -
Vvi4g0203 546 ProSiteProfiles BRCT domain profile. 51 143 IPR001357 -
Vvi4g0203 546 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 1 546 - -
Vvi4g0203 546 MobiDBLite consensus disorder prediction 310 329 - -
Vvi4g0203 546 CDD BRCT_TopBP1_rpt2_like 54 133 - -
Vvi4g0203 546 SMART BRCT_7 201 277 IPR001357 -
Vvi4g0203 546 SMART BRCT_7 53 133 IPR001357 -
Vvi4g0203 546 Gene3D BRCT domain 54 145 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0203 55 143 Core DNA Replication Machinery Family AT1G77320 39.326 2.49e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0203 - - vvi:100262753 1082.78