Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0194 ATGACTCTGAAGATCACATGGAAGACTATCATGCCAGGTTGTTACAAGACTGAGACCCCTATCGCCGAGTCGAGGAAGAAACCAGTTTTGAAGCAGGGTTCTTTCCAGAGACTATCTCTTTCCGACTTGAGCAACCCCGGTTCCCCGCTCTCCGTCGATGATATATCGAATTCCCTTATTGGTTCCAACCTCTATACCTTCACCCTTGCAGAGCTTAGAGAGATCACACACAACTTTTCGCCCAGTAATCTACTTGGAGAAGGCGGGTTTGGACCGGTTTACAAGGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGGCAGAAATAATCTTTCTTGGGCAACTGAGGCATCCACACCTTGTTAAACTGATTGGATACTGTTGTGAAGACGAGCACAGGCTTCTGATATATGAGTACATGGCAAGAGGGAGCTTAGAAAATCAACTCTTCAGAAGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATACCGGGATTTTAAGGCTTCCAACATTTTATTAGACCCTGATTACACTGCTAAACTCTCTGATTTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGGACATTTGACAACCATGAGTGATGTATACAGCTTTGGAGTTGTGCTGTTGGAGGTAATAAGTGGTAAACGGTCGATGGACAAAACAAGGCCTAGTCGCGAGCAAAACCTTGTGGAATGGGCGAGACCGATGCTCAAGGACCCGCGAAAACTTGACCGAGTAATAGACTCGAGACTTGAGGGACTGTTTTCTACCAAGGGGGCGCAGAAGGCAGCTGAATTGGCCTACAAATGTCTGAGCCACCAAGCCAAGGCTAGGCCGGCAATGAGCGATGTGGTGAAGATACTGGAGCCTCTGCAGGACTTTGATGATACTGTGATCAGCCCTTTTGTGTATGTGGTTCCAGCTGAAGGGGAGGTAGGAGATGAGAGTGAAAGCGAGAAGGACATTTCACATCAAGAAATCAAAGAAAGGGACGACGGCCAGCAAAACCGGCCCGCCTGGAGACATAGAATCAAGCTGCCACTGTCTCTAGTGGCTTACTCGGAATCTGCTTTGTATAAAAAATTTAGACATGAGTTGAACACTCAAACATATCAGTAA 1323 0.4785 MTLKITWKTIMPGCYKTETPIAESRKKPVLKQGSFQRLSLSDLSNPGSPLSVDDISNSLIGSNLYTFTLAELREITHNFSPSNLLGEGGFGPVYKGFIDEKLRPKLKAQPVAVKLLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEDEHRLLIYEYMARGSLENQLFRRYSAALPWSARMKILFGAAKGLAFLHEGDKPVIYRDFKASNILLDPDYTAKLSDFGLAKDGPEGDETHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLEVISGKRSMDKTRPSREQNLVEWARPMLKDPRKLDRVIDSRLEGLFSTKGAQKAAELAYKCLSHQAKARPAMSDVVKILEPLQDFDDTVISPFVYVVPAEGEVGDESESEKDISHQEIKERDDGQQNRPAWRHRIKLPLSLVAYSESALYKKFRHELNTQTYQ* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0194 440 PANTHER OS01G0588500 PROTEIN-RELATED 57 360 - -
Vvi4g0194 440 ProSiteProfiles Protein kinase domain profile. 79 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0194 440 FunFam Probable serine/threonine-protein kinase PBL8 162 371 - -
Vvi4g0194 440 FunFam Serine/threonine-protein kinase BIK1 47 161 - -
Vvi4g0194 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vvi4g0194 440 MobiDBLite consensus disorder prediction 379 406 - -
Vvi4g0194 440 Gene3D Transferase(Phosphotransferase) domain 1 162 368 - -
Vvi4g0194 440 SUPERFAMILY Protein kinase-like (PK-like) 56 357 IPR011009 -
Vvi4g0194 440 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Vvi4g0194 440 MobiDBLite consensus disorder prediction 385 406 - -
Vvi4g0194 440 Pfam Protein tyrosine and serine/threonine kinase 83 355 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0194 Vvi-Chr4 1691106 1693193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0194 54 398 Glycoside Hydrolase AT3G07070 49.138 3.21e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi4g0194 PK_Tyr_Ser-Thr 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0194 - - vvi:100262822 886.715