Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0187 ATGCTCGAACCGAAGATGAGCCTCCGGAAGGGCTCCAAAGTGTGGGTGGAAGACAGGGAATTAGCTTGGGTTGCAGCTGAAGTCGTCGATTTTGTTGGCAAGCAAGTCCAAGTCGTTACTGCTTCTCGGAAGAAGGTTTGGGCATCTAATGAGAAGCTACTCCCAAGGGATCCAGATGCAGAAGACCATGGTGGAGTTGATGATATGACAAAATTAACATATCTTAATGAGCCTGGAGTCCTTTACAACCTTGAGATAAGATATGCTCTCAATGACATTTATACATACACAGGAAGCATATTGATTGCTGTTAACCCATTCACAAAGCTTCCTCATCTTTACAATGTGCACATGATGGAGCAATATAAGGGTGCTCAATTTGGTGTGCTAAGCCCTCATGTTTTTGCAGTGGCTGATGCATCATATAGAGCTATGATGAATGAGGCTCGAAGCCAGTCTATACTTGTCAGTGGTGAAAGTGGGGCTGGGAAAACCGAGACAACAAAGCTTATTATGCAGTATCTTACATATGTTGGTGGGCGTGCTGCTGGTGATGACAGAACAGTTGAGCAGCAAGTTCTAGAATCTAATCCGCTCTTGGAGGCATTTGGTAATGCTAAAACTGTTAGAAATGACAATTCAAGTCGTTTTGGCAAATTTGTTGAGATCCAGTTTGATGCCAATGGTAGAATATCTGGCGCTGCAATCAGAACTTACCTTCTTGAACGGTCCCGTGTAGTTCAGATAACAGATCCTGAAAGGAATTATCACTGCTTTTATCAATTGTGTGCATCTGGAAGGGATGCTGAGAAGTATAAGCTGGGCAAACCAGATAACTTTCACTATTTAAATCAAAGCAAATCCTATGAATTAGAAGGAGTGAGCAATGGTGAGGAATACATGAAGACAAGGAGGGCAATGGGGATTGTTGGTATAAGTCATGATGATCAGGAAGCCATATTTCGAACTTTGGCTGCTATTCTACATCTGGGAAACGTTGAATTTTCTCCTGGCAAAGAGCATGACTCATCTGTTTTAAAGGACCAGAAATCTAACTTTCATATTCAGATGGCTGCTGATCTTTTTATGTGCGATGTCAACCTTCTGCGTGCAACTCTTTGTACACGTACAATCCAAACCCGTGAAGGGGATATTATTAAAGCTCTTGACTGTAATGCTGCTGTTGCTAGTCGGGATGCTTTGGCAAAGACTGTTTATGCTAAGCTGTTTGATTGGCTTGTTGAGAAGGTCAACAGGTCTGTTGGGCAAGATCTGAATTCCCGGGTGCAAATTGGAGTTTTGGACATCTATGGTTTTGAGTGCTTTAAGCATAATAGCTTTGAGCAATTTTGCATTAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTTAAGATGGAGCAAGAGGAGTATAGCAAAGAAGAAATTAATTGGAGCTACATTGAATTTATAGACAACCAAGATGTTTTGGATCTGATTGAGAAGAAACCTATTGGAATAATTGCCCTCTTGGATGAAGCTTGCATGTTTCCAAAATCAACACACAAAACATTTTCGACCAAGCTGTTTCAGAATTTACAGACTCACCAAAGGTTGGAGAAGGCAAAATTTTCGGAAACAGATTTTACCATTTCCCACTATGCTGGCAAGGTCACTTATCAAACAGATACCTTCCTAGATAAAAACCGTGATTATGTGGTGGTGGAACATTGCAATCTGTTGTCTTCTTCCAAATGCCCTTTTGTTGCTGGTCTTTTCCCTTCAATGCCTGAGGAATCTTCAAGATCTTCATACAAGTTTTCTTCTGTGGGATCTAGATTCAAGCAACAACTTCAAGCGCTCATGGAAACCCTTAACTCAACAGAGCCTCATTATATTCGCTGTGTGAAGCCAAACTCTTTGAACCGTCCTCAGAAATTTGAGAGTCAGAGTATCTTGCATCAGTTACGCTGTGGGGGTGTTTTAGAGGCTGTTCGAATAAGCCTGGCAGGCTATCCCACTAGGAGGAATTATTCTGAGTTTGTGGATCGCTTTGGCCTATTGGTTCCTGAGCTCATGGATGGAAGTTTTGACGAAAGAACTACGACGGAGAAAATTCTGCTGAAGCTAAAGCTTGAGAATTTCCAATTGGGAAAGACCAAAGTGTTTCTTAGAGCTGGGCAGATCGGTGTTTTAGACTCCAGACGGGCTGAGGTTTTGGATAGTGCAGCCAAACACATTCAGGGTCGATTTAGAACATTTATTGCACACAGGGATTTTGTTTCAATTCGAGCAGCCGCATTTGCACTCCAAGCATACTGCAGAGGATGTCATGCTCGGAATATCTATGCAGCAAAACGACAGGCTGCAGCGGCTCTTTTATTACAAAAATATGTTCGCAGATGGCTACTGAGGAATGCTTATATGCAGCTCTATTCTGCTTCTGTTCTTTTACAGTCTAGCATCCGTGGTTTCTCAATTCGTCAAAGATTTTTGTACCAAAAGAAGCATAGAGCTGCCACTCGAATTCAGGCTCAATGGAGGATGTGCAAGGTTCGATCAATTTTCCGCAATCGTCAAGGTTCGATTATAGCAATCCAATGCCGATGGAGGCAAAAACTGGCAAAAAGAGAGCTCCGGAAGCTTAAACAAGAGGCAAATGAAGCAGGCTTCTTGCGCTTGGCAAAGAATAAACTTGAGAAGCAGTTGGAAGATCTCACTTGGCGTTTGCAACTAGAAAAAAGATTACGGGTGTCTAATGAAGAGGCTAAGTCGGTAGAAATTTCAAAACTTAAAAAAGCATTGGGAACTTTGAACCTTGAGTTAGATGCAGCTAAATTGGTGACAGTTAACGAATGTAACAAGAATGCAGTGCTGCAAAATCAGTTAGATTTATCATTTAAGGAGAAATCTGCTTTGGAAAGAGAACTCATTGGAATGACAGAATTAAGAAAGGAAAATGCATTTTTAAAGAGTTCTTTAGAGAGCTTGGAAAAGAAGAACTCAGAATTGGAGTTCGAGCTTATCAAGGGTCAGAAAGATAGAAAGGATACCTTGGAAAAGTTGCACGAAGTTGAGCAAAAGTGTTTGCAGTTTCAGCAGAATTTACAGAGTTTGGAGGAGAAGCTCTCAAGTTTAGAGGATGAGAATCATGTACTGCGACAAAAAGCATTGACCCCTTCTCCAAAGAGCAACCACCCTGGATTTGTCAAGTCATTTTCAGAAAAGTACACTGGTCCTCTTGCCCTTGCTCAGTCTGACCGGAAGCCTGTATTTGAGTCTCCCACACCTACAAAACTAATTGTTCCTTTTTCACATACCTTATCTGAATCTCGCCGATCAAAGTTTGCTATTGAAAGGCATCCGGAGAACCATGACTTCCTTTCGAGTTGTATTAAAGCGGATTTGGGGTTTAAAGAAGGCAAACCTGTGGCAGCATGTATCATATATAAATGTCTTCTTCACTGGCATGCTTTTGAATCTGAGAGGACGGCTATTTTTGATCATATAATTGAGGGAATTAATGAGGTTCTTAAGGTGGGGGATGAGAATATCGCATTGCCATATTGGTTATCAAATGCCTCAGCGCTGCTATGCCTCCTGCAGAGGAATTTACGATCAAACGGTTTCTTGACTACAATTTCTCAACGTTCTGGTGGATCTTCTGGGATAACAGGAAGGGTTGCACAAAGTCTAAAATCTCCTTTCAAATATATTGGGTTCGATGATAGTATGTCCCATGTTGAAGCAAGGTATCCTGCTATACTATTCAAACAACAATTAACGGCTTGTGTGGAGAAGATTTTTGGCTTAATTCGTGATAATTTGAAGAAAGAAATATCACCGCTACTGGGTTCATGCATTCAGGCACCAAAAACCGTTCGACTACATGCTGGAAAATCAGCTAGATCACCTGGAGGTCTTCCTCAGCAATCACAAAGTAGTCAGTGGGATAGCATCATCAAATTCTTGGATTCTCTTATGGATCGTTTACTGGGAAATCATGTACCCTCCTTTTTCATCCGGAAGCTCATTACGCAGGTTTTCTCATTCATCAATATATCACTATTCAATAGTCTTCTACTAAGACGTGAATGTTGCACATTTTCAAATGGAGAATATGTGAAATCTGGTCTAGCAGATCTAGAAAAATGGATAGCCAGTGTAACAGAGGAGTTTGCAGGAACATCCTGGCATGAGCTAAACTATATTAGGCAAGCTGTTGGGTTTCTGGTGATACATCAGAAGAGGAAAAAATCTTTGGAAGAGATCATGCAGGATCTTTGTCCGGCATTGACCGTTAGACAAATATACCGAATTAGTACTATGTATTGGGATGATAAATATGGCACTCAGAGTGTCTCAAATGAGGTGGTTGCTCAGATGAGGGACATGTTGAATAAGGACAATCAGAATCTAACATCAAATTCATTCTTGTTGGATGATGATCTGAGCATTCCATTTTCTACTGAAGACATATACATGGCTATCCCACCAATGGATCCTTCAGATGTTGAGCTGCCACCATTCTTATCTGAACATCCATCTGTGCAGTTTCTGATCCTCCATCCCAAGTAA 4569 0.411 MLEPKMSLRKGSKVWVEDRELAWVAAEVVDFVGKQVQVVTASRKKVWASNEKLLPRDPDAEDHGGVDDMTKLTYLNEPGVLYNLEIRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAQFGVLSPHVFAVADASYRAMMNEARSQSILVSGESGAGKTETTKLIMQYLTYVGGRAAGDDRTVEQQVLESNPLLEAFGNAKTVRNDNSSRFGKFVEIQFDANGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASGRDAEKYKLGKPDNFHYLNQSKSYELEGVSNGEEYMKTRRAMGIVGISHDDQEAIFRTLAAILHLGNVEFSPGKEHDSSVLKDQKSNFHIQMAADLFMCDVNLLRATLCTRTIQTREGDIIKALDCNAAVASRDALAKTVYAKLFDWLVEKVNRSVGQDLNSRVQIGVLDIYGFECFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHKTFSTKLFQNLQTHQRLEKAKFSETDFTISHYAGKVTYQTDTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPSMPEESSRSSYKFSSVGSRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFESQSILHQLRCGGVLEAVRISLAGYPTRRNYSEFVDRFGLLVPELMDGSFDERTTTEKILLKLKLENFQLGKTKVFLRAGQIGVLDSRRAEVLDSAAKHIQGRFRTFIAHRDFVSIRAAAFALQAYCRGCHARNIYAAKRQAAAALLLQKYVRRWLLRNAYMQLYSASVLLQSSIRGFSIRQRFLYQKKHRAATRIQAQWRMCKVRSIFRNRQGSIIAIQCRWRQKLAKRELRKLKQEANEAGFLRLAKNKLEKQLEDLTWRLQLEKRLRVSNEEAKSVEISKLKKALGTLNLELDAAKLVTVNECNKNAVLQNQLDLSFKEKSALERELIGMTELRKENAFLKSSLESLEKKNSELEFELIKGQKDRKDTLEKLHEVEQKCLQFQQNLQSLEEKLSSLEDENHVLRQKALTPSPKSNHPGFVKSFSEKYTGPLALAQSDRKPVFESPTPTKLIVPFSHTLSESRRSKFAIERHPENHDFLSSCIKADLGFKEGKPVAACIIYKCLLHWHAFESERTAIFDHIIEGINEVLKVGDENIALPYWLSNASALLCLLQRNLRSNGFLTTISQRSGGSSGITGRVAQSLKSPFKYIGFDDSMSHVEARYPAILFKQQLTACVEKIFGLIRDNLKKEISPLLGSCIQAPKTVRLHAGKSARSPGGLPQQSQSSQWDSIIKFLDSLMDRLLGNHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLADLEKWIASVTEEFAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIMQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMRDMLNKDNQNLTSNSFLLDDDLSIPFSTEDIYMAIPPMDPSDVELPPFLSEHPSVQFLILHPK* 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0187 1522 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Vvi4g0187 1522 FunFam Myosin heavy chain 254 308 - -
Vvi4g0187 1522 CDD MyosinXI_CBD 1116 1488 IPR037975 GO:0007015
Vvi4g0187 1522 CDD MYSc_Myo11 78 722 IPR036018 -
Vvi4g0187 1522 Coils Coil 879 913 - -
Vvi4g0187 1522 Gene3D - 254 311 - -
Vvi4g0187 1522 ProSiteProfiles Myosin motor domain profile. 64 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 SMART MYSc_2a 59 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 SMART iq_5 736 758 IPR000048 GO:0005515
Vvi4g0187 1522 SMART iq_5 807 829 IPR000048 GO:0005515
Vvi4g0187 1522 SMART iq_5 759 781 IPR000048 GO:0005515
Vvi4g0187 1522 SMART iq_5 784 806 IPR000048 GO:0005515
Vvi4g0187 1522 SMART iq_5 855 877 IPR000048 GO:0005515
Vvi4g0187 1522 SMART iq_5 832 854 IPR000048 GO:0005515
Vvi4g0187 1522 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 Gene3D Kinesin motor domain 67 664 IPR036961 -
Vvi4g0187 1522 Gene3D - 668 735 - -
Vvi4g0187 1522 Pfam Myosin head (motor domain) 66 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 Gene3D - 736 785 - -
Vvi4g0187 1522 Gene3D - 835 884 - -
Vvi4g0187 1522 Gene3D - 786 834 - -
Vvi4g0187 1522 Coils Coil 953 973 - -
Vvi4g0187 1522 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Vvi4g0187 1522 Pfam DIL domain 1341 1444 IPR002710 -
Vvi4g0187 1522 PANTHER MYOSIN 55 1454 - -
Vvi4g0187 1522 Gene3D - 440 625 - -
Vvi4g0187 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 883 IPR027417 -
Vvi4g0187 1522 ProSiteProfiles IQ motif profile. 785 812 IPR000048 GO:0005515
Vvi4g0187 1522 Coils Coil 977 1053 - -
Vvi4g0187 1522 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vvi4g0187 1522 ProSiteProfiles Dilute domain profile. 1165 1465 IPR002710 -
Vvi4g0187 1522 ProSiteProfiles IQ motif profile. 808 837 IPR000048 GO:0005515
Vvi4g0187 1522 SMART DIL_2 1340 1447 IPR002710 -
Vvi4g0187 1522 Pfam IQ calmodulin-binding motif 787 805 IPR000048 GO:0005515
Vvi4g0187 1522 Pfam IQ calmodulin-binding motif 834 854 IPR000048 GO:0005515
Vvi4g0187 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 787 IPR027417 -
Vvi4g0187 1522 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Vvi4g0187 1522 Gene3D Myosin VI head, motor domain, U50 subdomain 313 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0187 Vvi-Chr4 1596658 1631966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0187 2 1521 Myosins gene family AT4G33200 75.395 0.0 2335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0187 K10357 - vvi:100254166 2945.22