Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0186 ATGGGAAGAAGAAAGCTATCGATACGGAGATTGCAGAGTGGGAGAGAGAGGCAAGCGAAGTATTCTCAGCGGAAGCAAGGCATTCTCAGAAAAGCCAACGATCTCGCTGTTCTCTGTGACACCGATGTCTTGCTCCTCATGTTCTCGCCCACCGGCAAGCCCTGCCTCACCGTCGGCCAAAACAAAAATCTGCTTACGGTCATGGAGAGGTTAGCAAGCCTATCCGTGGATTATCGAGAAGAAAGGGCTGCCTACACCTTGGAACTATTAGCCAAAATGCACAGGAGACTCAACTCTGATGTGGATCAAAAGAACTTCTCCCTTGACAGCAATGAAATCCTCCAACTGAAAAGATCTGAATTGGAACAGCTGAGAAGCCAACTAGCCGAAAAGAGCAAAGCCATGAGCCAAGAATTGATTCAGAGAATGAATGTTGCTGTGACTCTGAAGCATCAGCAAGAGTAA 465 0.4753 MGRRKLSIRRLQSGRERQAKYSQRKQGILRKANDLAVLCDTDVLLLMFSPTGKPCLTVGQNKNLLTVMERLASLSVDYREERAAYTLELLAKMHRRLNSDVDQKNFSLDSNEILQLKRSELEQLRSQLAEKSKAMSQELIQRMNVAVTLKHQQE* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0186 154 Coils Coil 111 141 - -
Vvi4g0186 154 CDD MADS 2 54 - -
Vvi4g0186 154 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Vvi4g0186 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi4g0186 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 137 - -
Vvi4g0186 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 54 IPR002100 GO:0003677|GO:0046983
Vvi4g0186 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi4g0186 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi4g0186 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi4g0186 154 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 80 - -
Vvi4g0186 154 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Vvi4g0186 154 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0186 Vvi-Chr4 1588240 1591158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0186 1 147 Type I MADS-box Gene Family AT2G03060 34.395 7.06e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi4g0186 SRF-TF 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0186 - - vvi:100255886 271.166