Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0185 ATGTTTTGTTTAATTAGTGATCTGAGGGGGAATCGGCTCTCCGGGCAAATCCCAGATGAGATCGGTGACTGTTCTTCGATGAGCAGCCTGGATTTGTCGTTCAATGAGCTGTATGGGGATATACCATTTTCCATTTCAAAGTTGAAACAACTAGAACAACTAGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTTGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCTTGGGCTGCGAGGAAACAATTTGGTTGGTACTTTGTCTCCTGATATGTGCCAGTTGACTGGGTTGTGGTATTTTGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTTGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATTATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTAGATCTAAGCTGCAACATGTTAAGCGGACCCATCCCTCCTATTCTGGGAAACTTAACTTATACCGAGAAACTGTATTTGCATGGTAACAAGTTGGCCGGATCAATCCCCCCAGAGCTCGGGAATATGACAAAACTCCACTACTTGGAATTGAATGATAATCATCTCACAGGGTCTATTCCATCAGAACTTGGGAAGCTGACCGACTTGTTTGACCTAAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCTCAATGTGCATGGGAACAAATTGAATGGAACTATACCACCTGCATTTGAGAAGCTGGAGAGTATGACATATTTAAATCTCTCCTCCAACAATCTTCGAGGCTCCATTCCTATTGAGTTATCTCGGATTGGTAACTTGGACACCTTGGACATTTCAAATAACAGGATTACTGGCTCCATTCCTTCTTCCCTTGGAGACTTGGAGCATCTTCTAAAACTGAATTTAAGCAGGAACCACTTAACTGGATGTATTCCAGCCGAGTTTGGTAATCTAAGGAGTGTTATGGAGATAGATCTTTCAAATAATCATCTATCAGGAGTGATTCCTCAAGAACTTGGTCAACTTCAGAACATGTTCTTCCTGAGGGTTGAAAACAACAATTTATCAGGGGATGTGACATCACTGATCAACTGCCTCAGTCTTACTGTCCTGAATGTGTCTTATAACAACCTCGGTGGTGATATTCCTACAAGCAATAACTTCTCAAGATTCTCACCAGACAGTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAGTCGCAATATCTAAAGCAGCTATTCTAGGGATTGCTCTGGGTGCCCTTGTGATTCTTCTCATGATCTTAGTGGCAGCATGTCGGCCACACAATCCAATTCCTTTTCCAGATGGATCACTTGACAAACCAGTTACATACTCAACACCGAAGCTGGTGATCCTTCACATGAATATGGCACTGCATGTGTACGAGGATATCATGAGAATGACGGAAAACTTGAGTGAGAAGTATATAATTGGTTATGGTGCCTCAAGTACAGTGTACAAATGCGTTCTTAAAAACTGCAAGCCAGTGGCTATCAAGAGACTCTACTCTCACAACACACAGTACCTAAAGGAATTCGAGACGGAGCTTGAGACTGTTGGAAGCATCAAACATAGGAATCTGGTCTGTCTACAAGGATATTCCCTGTCCCCTTCTGGGAACCTACTCTTCTATGACTACATGGAAAATGGCAGTCTCTGGGATCTACTTCATGGCCCTACAAAGAAGAAAAAGCTTGATTGGGAAACTCGTCTTCAGATTGCACTTGGAGCAGCTCAAGGGCTTGCTTACCTTCACCATGATTGTAGCCCTCGAATAATTCACAGGGATGTCAAGTCATCAAATATTTTGTTGGACAAGGATTTTGAGGCTCATCTCACTGACTTTGGCATTGCCAAGGTTTTATGCTCATCAAAGTCTCATACTTCTACTTACATTATGGGCACCATTGGTTATATAGACCCTGAGTATGCCCGTACTTCACGTCTCACGGAAAAGTCTGATGTCTACAGCTATGGAATTGTTCTACTTGAGCTGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATATCACTGCCACTTGTAAAGATCTTGGAGCGGTAAAGAAAGTGTTTCAGCTGGCCCTTCTATGCACCAAGAAGCAGCCCTCTGATCGGCCCACCATGCACGAAGTGACCCGGGTGCTAGGCAGCCTGGTGCCGGCCACTGCACCAAAACAAATAGCCCTGACCACGACTCCGCCTGCTCCACTTCCATCTACCAAAGTGCCATGCTACATGGACGAGTATGCCAATCTGAAGACCCCTCACATGGTAAATTGCTCATCTATGAGCACCTCAGATGCCCAACTCTTCCTAAAATTTGGTGAAGTAATATCTCAGACAGTGAGTGATGAGGCAGTGCAGTAA 2691 0.4355 MFCLISDLRGNRLSGQIPDEIGDCSSMSSLDLSFNELYGDIPFSISKLKQLEQLVLKNNQLIGPIPSTLSQIPNLKILDLAQNRLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGTIPQNIGNCTAFQVLDLSYNRLTGEIPFNIGFLQVATLSLQGNQLSGQIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLAGSIPPELGNMTKLHYLELNDNHLTGSIPSELGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFEKLESMTYLNLSSNNLRGSIPIELSRIGNLDTLDISNNRITGSIPSSLGDLEHLLKLNLSRNHLTGCIPAEFGNLRSVMEIDLSNNHLSGVIPQELGQLQNMFFLRVENNNLSGDVTSLINCLSLTVLNVSYNNLGGDIPTSNNFSRFSPDSFIGNPGLCGYWLSSPCHQAHPTERVAISKAAILGIALGALVILLMILVAACRPHNPIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHNTQYLKEFETELETVGSIKHRNLVCLQGYSLSPSGNLLFYDYMENGSLWDLLHGPTKKKKLDWETRLQIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKVLCSSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTTNNAVMETVDPDITATCKDLGAVKKVFQLALLCTKKQPSDRPTMHEVTRVLGSLVPATAPKQIALTTTPPAPLPSTKVPCYMDEYANLKTPHMVNCSSMSTSDAQLFLKFGEVISQTVSDEAVQ* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0185 896 Pfam Protein kinase domain 560 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0185 896 SMART LRR_typ_2 120 144 IPR003591 -
Vvi4g0185 896 SMART LRR_typ_2 239 263 IPR003591 -
Vvi4g0185 896 SMART LRR_typ_2 359 382 IPR003591 -
Vvi4g0185 896 SMART LRR_typ_2 72 96 IPR003591 -
Vvi4g0185 896 SMART LRR_typ_2 383 407 IPR003591 -
Vvi4g0185 896 SMART LRR_typ_2 311 335 IPR003591 -
Vvi4g0185 896 Pfam Leucine Rich repeat 430 446 IPR001611 GO:0005515
Vvi4g0185 896 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 96 206 - -
Vvi4g0185 896 SMART serkin_6 557 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0185 896 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 528 632 - -
Vvi4g0185 896 FunFam Piriformospora indica-insensitive protein 2 3 90 - -
Vvi4g0185 896 SUPERFAMILY L domain-like 214 471 - -
Vvi4g0185 896 Gene3D Transferase(Phosphotransferase) domain 1 633 836 - -
Vvi4g0185 896 Gene3D Phosphorylase Kinase; domain 1 534 632 - -
Vvi4g0185 896 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 230 823 - -
Vvi4g0185 896 ProSiteProfiles Protein kinase domain profile. 557 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0185 896 Pfam Leucine rich repeat 337 396 IPR001611 GO:0005515
Vvi4g0185 896 Pfam Leucine rich repeat 26 85 IPR001611 GO:0005515
Vvi4g0185 896 ProSiteProfiles Leucine-rich repeat profile. 74 96 IPR001611 GO:0005515
Vvi4g0185 896 Gene3D Ribonuclease Inhibitor 194 480 IPR032675 -
Vvi4g0185 896 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 207 479 - -
Vvi4g0185 896 ProSiteProfiles Leucine-rich repeat profile. 337 360 IPR001611 GO:0005515
Vvi4g0185 896 SUPERFAMILY L domain-like 7 228 - -
Vvi4g0185 896 Gene3D Ribonuclease Inhibitor 5 187 IPR032675 -
Vvi4g0185 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672|GO:0006468
Vvi4g0185 896 ProSitePatterns Protein kinases ATP-binding region signature. 563 585 IPR017441 GO:0005524
Vvi4g0185 896 SUPERFAMILY Protein kinase-like (PK-like) 535 823 IPR011009 -
Vvi4g0185 896 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 633 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0185 Vvi-Chr4 1579928 1586345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0185 4 90 Receptor kinase-like Gene Family AT5G07180 40.230 8.08e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vvi4g0185 Pkinase 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0185 K20718 - vvi:100259283 1739.16