Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0184 ATGACTTCGGATCTGCTTCGGATCTCTCTTTATCCTCCTCGGAACCTCTGTTTCAGCTACGATTCAAAGTCTAATGTTCATGGATTCAGCTTCAGTTCTCTTCCACAACGACGCCGTTCGCAGCGTCTCTGGAAAGTCTCCGGTAGAAGAGCGCCTAATTTTAATTTTATTTTCTCGAAGGCCATTGATATTAGAGCTCCGGTGAAAAGCACGCCTTTGACGGAGGAGCAACGGCCGCGGGGCGACTCGCCGTTGCTTCTCGATGTCACTGGGATGGTGTGCGGAGCCTGCGTTGCGCGAGTCAAATCTGTGCTGTCCGCCGATGAGCGTGTCGAATCGGCGGTGGTCAACATGCTGACGGAGACGGCGGCGGTCCGGATAAGGCCGGAGGTTGTGGAGGAGACCGTGGGGGAGAGCTTAGCGAGGAGATTGACAGAGTGTGGATTTCCGACGAAGGAGAGGGTTTCGGGGACGGGAGTTGAGGAGAATGTAAAGAAGTGGAGGGAGATGGGGGAGAAGAAGGAGGCGTTGCTTGTGAAGAGTCGGAATCGGGTGGCTGTTGCTTGGACTTTGGTGGCGTTGTGCTGTGGATCGCATGCTTCGCACATTTTGCATTCTCTCGGGATTCATGTTGATCATGGGTCATTTTGGGAGCTACTTCATAATTCATATGTGAAAGGTGGATTGGCTTTGGGTGCTCTCCTGGGACCCGGACGAGAGCTACTTTTTGATGGTCTGAGGGCATTCTCAAAGGGATCACCAAATATGAATTCTCTTGTAGGATTTGGATCTGTTGCTGCATTTGGCATAAGTATGGTCTCACTTTTTAACCCCGGGCTTCAATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTTGTGCTCCTTGGACGTTCTCTTGAAGAGAAGGCGAGGATCAGGGCATCTAGCGATATGAATAAACTTTTATCACTGATATCCACTCGGTCACGGCTTGTGATTACTTCCTCAGAAAGTGACTCCTCTACTAATAGTATACTTTGCTCTGATGCAATGTGCATTGAAGTCCCAACTGATGATATTCGAGTTGGGGACTCAGTGTTGGTTTTGCCTGGAGAAACAATACCTGTAGATGGAAGAGTTCTTGCTGGAAGAAGTGTTGTGGACGAGTCCATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAAGAGGGTTTTGTGGTCTCTGCTGGAACAATAAACTGGGGTGGTCCTTTAAGGATTGAAGCCTCTTCAAACGGCTCCAACTCCACAATATCTAAGATTGTTTCCATGGTTGAGGATGCTCAAGGCCGTGCAGCACCCATACAAAGGCTTGCAGATTCAATTGCTGGACCATTTGTCTATATTGTGATGACTTTATCAGCAGCAACTTTTACCTTTTGGTACTACCTAGGCACACACATCTTTCCAGATGTATTGTTCAATGATATTGCTGGACCAGATGGAAATCCTTTGCTTTTGAGCTTGAAACTTTCTGTGGATGTTTTGGTGGTCTCCTGTCCATGCGCACTGGGGCTTGCCACACCTACTGCAATCTTAGTTGGCACCTCTCTTGGAGCTAAACAAGGACTTCTTATAAGAGGAGGAGACGTACTAGAACGTTTGGCCAGTGTTGACCATGTGGCTTTTGACAAGACTGGAACTCTTACAAAAGGAAAACCAGCTGTTTCTGCTGTGGCATCTTTGGCTTATGAAGAACAAGAAATTCTCCGCATTGCTGCTGCTGTGGAGAAAACAGCAGTGCATCCAATTGCAAAGGCTATTGTAAATAAAGCAGAATCGTTGAATTTGACCATCCCAATCACAACAGCGCAATTAGTAGAACCAGGTTTCGGCTCCTTGGCAGAAGTAGATGGGCGTTTGGTCGCTGTGGGTTCATTGGAATGGGTTCAAGATCGTTTTCAAAGGAGAACAAACCACTCTGATCTAATGAATTTAGAAAATGCCATGATGCATCATTTATCAAATGAAGTATCTTTGTCAAACCATTCCCGAACGGTTGTTTATGTTGGACGTGAAGGAGACGGTGTGATTGGTGCTATTGCAGTATGTGACAGTTTACGCCATGACGCCAACTCTGCTGTAACCAGGCTTCAGGAGAAAGGAATCAAAACCATCCTCTTGTCAGGGGACAGGGAAGAGGCAGTTGCAACTATAGCAAAGACTGTTGGAATAGAAAGTGAATTTATAAATTCATCCTTGACTCCTCAGCAGAAATCTGGTGTCATAAAATCTCTCCAAACTGCAGGACATCGTGTTGCAATGGTAGGTGATGGCATAAATGATGCACCCTCTTTAGCTCTTGCCGATGTTGGGATAGCTTTGCAAGTTGAATCACAGCAAAGCGCAGCATCTGATGCAGCATCCATTATACTTCTTGGAAATAAAATCTCACAAGTGGCAGATGCATTAGATCTCGCACAAGCCACAATGGCAAAAGTCTATCAAAATTTGTCATGGGCAGTCGCATATAATGTGGTCGCAGTCCCCATTGCTGCCGGGGTACTACTTCCCCGTTTTGATCTTGCCATGACGCCTTCCCTTGCAGGTGGGTTGATGGCTCTGAGCTCAATATTCGTAGTGACCAACTCGGTGCTTCTGCAGCTTCATGGGTCTGACAAGAACAGGAAAAGCTAG 2667 0.4679 MTSDLLRISLYPPRNLCFSYDSKSNVHGFSFSSLPQRRRSQRLWKVSGRRAPNFNFIFSKAIDIRAPVKSTPLTEEQRPRGDSPLLLDVTGMVCGACVARVKSVLSADERVESAVVNMLTETAAVRIRPEVVEETVGESLARRLTECGFPTKERVSGTGVEENVKKWREMGEKKEALLVKSRNRVAVAWTLVALCCGSHASHILHSLGIHVDHGSFWELLHNSYVKGGLALGALLGPGRELLFDGLRAFSKGSPNMNSLVGFGSVAAFGISMVSLFNPGLQWDASFFDEPVMLLGFVLLGRSLEEKARIRASSDMNKLLSLISTRSRLVITSSESDSSTNSILCSDAMCIEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLTGESLPVFKEEGFVVSAGTINWGGPLRIEASSNGSNSTISKIVSMVEDAQGRAAPIQRLADSIAGPFVYIVMTLSAATFTFWYYLGTHIFPDVLFNDIAGPDGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLASVDHVAFDKTGTLTKGKPAVSAVASLAYEEQEILRIAAAVEKTAVHPIAKAIVNKAESLNLTIPITTAQLVEPGFGSLAEVDGRLVAVGSLEWVQDRFQRRTNHSDLMNLENAMMHHLSNEVSLSNHSRTVVYVGREGDGVIGAIAVCDSLRHDANSAVTRLQEKGIKTILLSGDREEAVATIAKTVGIESEFINSSLTPQQKSGVIKSLQTAGHRVAMVGDGINDAPSLALADVGIALQVESQQSAASDAASIILLGNKISQVADALDLAQATMAKVYQNLSWAVAYNVVAVPIAAGVLLPRFDLAMTPSLAGGLMALSSIFVVTNSVLLQLHGSDKNRKS* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0184 888 NCBIfam heavy metal translocating P-type ATPase 256 877 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vvi4g0184 888 NCBIfam HAD-IC family P-type ATPase 318 849 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi4g0184 888 Gene3D - 307 439 - -
Vvi4g0184 888 PANTHER ATP7, ISOFORM B 80 879 - -
Vvi4g0184 888 Pfam Heavy-metal-associated domain 87 149 IPR006121 GO:0046872
Vvi4g0184 888 SUPERFAMILY HAD-like 551 874 IPR036412 -
Vvi4g0184 888 Pfam E1-E2 ATPase 345 532 - -
Vvi4g0184 888 SUPERFAMILY HMA, heavy metal-associated domain 85 150 IPR036163 GO:0046872
Vvi4g0184 888 Gene3D - 83 154 - -
Vvi4g0184 888 FunFam Copper-transporting ATPase PAA2, chloroplastic 563 697 - -
Vvi4g0184 888 SFLD Haloacid Dehalogenase 535 819 - -
Vvi4g0184 888 FunFam Copper-transporting ATPase 1, putative 308 439 - -
Vvi4g0184 888 SUPERFAMILY Calcium ATPase, transmembrane domain M 288 546 IPR023298 -
Vvi4g0184 888 Gene3D - 563 697 IPR023299 GO:0000166
Vvi4g0184 888 Pfam haloacid dehalogenase-like hydrolase 549 780 - -
Vvi4g0184 888 ProSitePatterns E1-E2 ATPases phosphorylation site. 554 560 IPR018303 -
Vvi4g0184 888 PRINTS P-type cation-transporting ATPase superfamily signature 552 566 - -
Vvi4g0184 888 PRINTS P-type cation-transporting ATPase superfamily signature 689 700 - -
Vvi4g0184 888 PRINTS P-type cation-transporting ATPase superfamily signature 711 721 - -
Vvi4g0184 888 PRINTS P-type cation-transporting ATPase superfamily signature 385 399 - -
Vvi4g0184 888 PRINTS P-type cation-transporting ATPase superfamily signature 766 785 - -
Vvi4g0184 888 SUPERFAMILY Calcium ATPase, transduction domain A 345 435 IPR008250 -
Vvi4g0184 888 SFLD p-type atpase 535 819 IPR044492 -
Vvi4g0184 888 CDD HMA 87 150 IPR006121 GO:0046872
Vvi4g0184 888 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 554 649 IPR023299 GO:0000166
Vvi4g0184 888 Gene3D - 543 817 IPR023214 -
Vvi4g0184 888 ProSiteProfiles Heavy-metal-associated domain profile. 83 152 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0184 Vvi-Chr4 1557780 1570292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0184 247 885 Primary Pumps ATPases AT1G63440 35.791 1.89e-111 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0184 K17686 - vvi:100264462 1666.74