Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0176 ATGGCTTCTACTATCAGTCAATGTACTAAGAAAGAAGCTAACAGAGGAGCATGGACAGCTGAGGAAGACCACAAACTGGCTCAAGTGATTGCAGTTCATGGGGCAAAGAGGTGGAAATGTGTGGCAATGAAAGCAGGTTTGAAACGATGTGGGAAGAGTTGCAGGTTGAGATGGATGAATTATCTAAGGCCTAATATCAAGAGAGGCAATATATCAGACCAAGAACAGGACTTAATACTAAGGCTTCATAAACTCCTTGGAAATAGGTGGTCTTTGATTGCTGGAAGGTTACCGGGTCGAACAGACAATGAGATCAAGAACTACTGGAATTCTCATTTAAGCAAGAAGACAAAGCAGAAGGAGAAACAAAGCAGAAGTTCAACCACAGTGGAGTGCAGGCCTCAGAAAACAAAGGTGATGGAGATGGAGAGTGTAGACAATGGAAGTGAAAGGGTAGCCTCAAAAGGAGATGAAGACTCAAAAACCAGCTTTGTTGGGGATGAGTCATTTGATTATTCTAGTGAGGGCCCTTTGAATTTGGAATGGATGAGTAAATTCCTTGAAATGGATGAGGCTTGGCTTGATTTTGCATGA 594 0.4242 MASTISQCTKKEANRGAWTAEEDHKLAQVIAVHGAKRWKCVAMKAGLKRCGKSCRLRWMNYLRPNIKRGNISDQEQDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKTKQKEKQSRSSTTVECRPQKTKVMEMESVDNGSERVASKGDEDSKTSFVGDESFDYSSEGPLNLEWMSKFLEMDEAWLDFA* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0176 197 Gene3D - 15 67 - -
Vvi4g0176 197 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 148 - -
Vvi4g0176 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vvi4g0176 197 MobiDBLite consensus disorder prediction 114 168 - -
Vvi4g0176 197 SMART sant 14 64 IPR001005 -
Vvi4g0176 197 SMART sant 67 115 IPR001005 -
Vvi4g0176 197 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vvi4g0176 197 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vvi4g0176 197 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vvi4g0176 197 FunFam MYB-related transcription factor 14 67 - -
Vvi4g0176 197 CDD SANT 72 113 IPR001005 -
Vvi4g0176 197 FunFam transcription repressor MYB5-like 72 139 - -
Vvi4g0176 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vvi4g0176 197 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Vvi4g0176 197 Gene3D - 72 143 - -
Vvi4g0176 197 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vvi4g0176 197 CDD SANT 17 62 IPR001005 -
Vvi4g0176 197 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0176 Vvi-Chr4 1483002 1484002 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0176 4 171 MYB Transcription Factor Family AT3G13540 48.066 3.28e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g0176 Myb_DNA-binding 8.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0176 K09422 - vvi:100250947 407.912