Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0174 ATGCAGTATGGTTATGGAATGGCAGAGACCCATCAGCAGCAATTCATGGAGGGTGATTCTTGTTCTTCACTTTTCTCAATCTCAACCCCCCAGAAGCAAAACCAGCACCACCATCTTCATTATCAACACCACCACCACCACCACCATCTGCCGCCGCCCCCGCCGCCGCACCAGCAGCAGAAACATGAGAGGCAGCAGCAGCAACAACAGTTCTTTCAGCTCCATCCCGTTCCATTTACCCAGCAATTGCTGCAGCAACAGCACCAGTTTGAAGTATTTCAACTGCAGCAGCAACAGCAACAGCAACAGCGGAGACTGCACCAGCAGCTAAGACTGGAAAATGAACTGGGTCGCAATGGTGGAGGAGGAGGAGAAGGTGTCGGCAATGGCGGTGGCGGCGAAGGAGGCAGCGCCTCGCTTCCTTTCTTCAATTTCAAGCTGGGTTTGAACGAGAATAGTGGTAACAGAGAGGTTGTGATGAACGAAGAAGATAAAGAGGAGGATGGTTTGATTGGTGGCAGTGAGGAACATATTCCTGGGAATAGACCTAATTCCCTAGAAATGCCCCAATGTTGTTGGCAGTCCCAAGGAGATGGTACCATTAAAGAACCTTTCTGGAAACCCCTGAATGCCCAGCTCTTCAACAAGAACGACAAGGAGACTAATGAAGATGAAGAGAAGAAGGAAGAGGGAGAGGGCAACAAGAAGATTAATCACGGACAAGTACTAGACAACGATGGAGGCAAGAACTTGGGAAACAAGTACAGATTTTTCGGTGAGCTTGAAGCAATTTGCAGCGGTGCGGGGCTTGGCGAAACGAATCAAACGGGATCGGGATCAGCTCTGACCGGTGAAAACATGACTAGGAATGCCGGGTTGCTGAGGCCTTTAGCTGATCCCCATTGCAGCAATCTCGGTGGTGCTGCTGCTGCAATTGGGGTTGATCATGGGTCAGAGACCTCAATTGGGGAAGAAGCTGCGTTGCGGAAGCTTCAGAAAAGGAAGAGGAGGAGGAAAATGAAGGAAGAGTTGAATTCCATGGCGGGTTTCTTTGAGAGCTTGGTAAAGCAGCTGATGGATCACCAAGAGGGTCTCTACAGAAAGTTCTTGGAAGTGGTTGAGAGAATAGATCAAGAGAGGATGGAGCGAGAGGAAGCATGGAGGAGCAAACAACTCGAGAACTTTAACCGAGAAGCCGCCGCAAGAGCCCATGAACAAACTCTAGCTTCAAGTAGAGAGGTTGCGGTTGTCTCATACTTAGAAAAAATCACAGGCCAAAGCATCGATCTTCCCAATAAGAACAACACCCAATTACACTCTCAACGTTATCTTCCAAAGGAACCCGTGAAAATCAACAACTTCAGCAGCAGTAACACAAACAGCAGATGGCCTAAAGCTGAAGTCCAAGCACTGATTCAAGTCAGAAGTAGATTAGAATCGAGGTTTCAGGAGCCAGGCCTAAAAGGGCCTCTGTGGGAAGAAATAAGCTCTTCAATGACTTCAATGGGTTATCAGAGAAGCGCCAAAAGATGTAAGGAAAAGTGGGAGAACATCAACAAGTACTTCAGAAAAACCAAAGACAGTGCCAAGAAACGCTCTCACCAATCCAAAACATGCCCTTACTTTCATCAGCTCGATCAGCTATACTCGAGAACACCATTCTATCCCAACCCATCAGCTTCTACTGATTCTGGGGTTCACAATTTGAAGGGTAATTCAGAGCTCTTAGATGCCATTATAGCCATGAATGACCCCAACACTGCTCAGAAGGTTGCCCCAATGGAGTCCTTTGATGGAAACATTGATGATAAATCAGAAGCTGATCAACAAATAAACCATGGAAAAGAAAAGGAGAACCATAGGGACATTGAGGAAGGAGACCAAGATATGAACAACGAAGACGAAGAAGATGATGAACAAGACAACGAAGAAGACGATGAAGAAGGTGGAGGAGGTGATGGTGAAGAAGAAGATGGAGATTGA 1983 0.4715 MQYGYGMAETHQQQFMEGDSCSSLFSISTPQKQNQHHHLHYQHHHHHHHLPPPPPPHQQQKHERQQQQQQFFQLHPVPFTQQLLQQQHQFEVFQLQQQQQQQQRRLHQQLRLENELGRNGGGGGEGVGNGGGGEGGSASLPFFNFKLGLNENSGNREVVMNEEDKEEDGLIGGSEEHIPGNRPNSLEMPQCCWQSQGDGTIKEPFWKPLNAQLFNKNDKETNEDEEKKEEGEGNKKINHGQVLDNDGGKNLGNKYRFFGELEAICSGAGLGETNQTGSGSALTGENMTRNAGLLRPLADPHCSNLGGAAAAIGVDHGSETSIGEEAALRKLQKRKRRRKMKEELNSMAGFFESLVKQLMDHQEGLYRKFLEVVERIDQERMEREEAWRSKQLENFNREAAARAHEQTLASSREVAVVSYLEKITGQSIDLPNKNNTQLHSQRYLPKEPVKINNFSSSNTNSRWPKAEVQALIQVRSRLESRFQEPGLKGPLWEEISSSMTSMGYQRSAKRCKEKWENINKYFRKTKDSAKKRSHQSKTCPYFHQLDQLYSRTPFYPNPSASTDSGVHNLKGNSELLDAIIAMNDPNTAQKVAPMESFDGNIDDKSEADQQINHGKEKENHRDIEEGDQDMNNEDEEDDEQDNEEDDEEGGGGDGEEEDGD* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0174 660 MobiDBLite consensus disorder prediction 213 246 - -
Vvi4g0174 660 PANTHER FI21293P1 219 616 - -
Vvi4g0174 660 CDD GT1 462 526 - -
Vvi4g0174 660 MobiDBLite consensus disorder prediction 29 69 - -
Vvi4g0174 660 MobiDBLite consensus disorder prediction 597 627 - -
Vvi4g0174 660 MobiDBLite consensus disorder prediction 628 660 - -
Vvi4g0174 660 MobiDBLite consensus disorder prediction 596 660 - -
Vvi4g0174 660 FunFam Trihelix transcription factor GT-2 463 524 - -
Vvi4g0174 660 MobiDBLite consensus disorder prediction 217 239 - -
Vvi4g0174 660 Gene3D - 463 524 - -
Vvi4g0174 660 MobiDBLite consensus disorder prediction 115 134 - -
Vvi4g0174 660 ProSiteProfiles Myb-like domain profile. 455 519 IPR001005 -
Vvi4g0174 660 Pfam Myb/SANT-like DNA-binding domain 461 548 IPR044822 -
Vvi4g0174 660 MobiDBLite consensus disorder prediction 36 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0174 Vvi-Chr4 1473782 1475876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0174 462 595 Trihelix Transcription Factor Family AT1G76890 36.496 1.56e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi4g0174 Myb_DNA-bind_4 4.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0174 - - vvi:100256096 1009.21