Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0173 ATGGAAAAAAGTCATCCCTGTACTCGGAGAAGCAATAGAGGAGCTTGGACAGCTCTTGAAGACAAGCTGCTCAGAGATTATGTTAAAACTCATGGTCCAGGGAAGTGGAGGAATGTTTCCCAGGAGACAGGCCTTGAAAGAAGTGGAAAGAGCTGCAGATTGAGGTGGTTGAATTATCTGAGACCTGATATCAAGAGAGGCAACATTTCTCCTGAAGAAGAAGACCTCATCATTAGGCTCCACAAGCTCTTAGGCAACAGATGGTCTTTGATAGCTGGAAGGCTTCCTGGACGATCAGACAATGAAATCAAGAACTATTGGAACACAACCTTAGCCAAGAGGGTGGTTCATGGCCAGAACTCCAACCAAAGCAAAGACGACAGAAAGGAAAAGGAGAAGGAGCCTTCTAACATGGATGAAGCACCCATGGAAATGAAAGGTAGTGAAGGGCCTGATCCCGTGAATGATTTCAAAGAAGATTATTCACCAAACCCAGCAATGGATTTCTCGGGAAAGCTCTTTCAATACAATGATACAGATTATGATCAGCTGTGGAACTTCTCTGATTTTGATGATGGCAGGTGGGGTTGTGGAAACATGGGAGGTGCCAATGGCCTGTGCCAGTGGTCTGATTTTCCGTCTGCAAGTGCTGAAGAAGCGGAGATTTTCTTCCATTCCTAA 681 0.4523 MEKSHPCTRRSNRGAWTALEDKLLRDYVKTHGPGKWRNVSQETGLERSGKSCRLRWLNYLRPDIKRGNISPEEEDLIIRLHKLLGNRWSLIAGRLPGRSDNEIKNYWNTTLAKRVVHGQNSNQSKDDRKEKEKEPSNMDEAPMEMKGSEGPDPVNDFKEDYSPNPAMDFSGKLFQYNDTDYDQLWNFSDFDDGRWGCGNMGGANGLCQWSDFPSASAEEAEIFFHS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0173 226 CDD SANT 70 111 IPR001005 -
Vvi4g0173 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 139 - -
Vvi4g0173 226 MobiDBLite consensus disorder prediction 120 140 - -
Vvi4g0173 226 FunFam Transcription factor TT2 69 139 - -
Vvi4g0173 226 Gene3D - 13 65 - -
Vvi4g0173 226 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vvi4g0173 226 CDD SANT 15 60 IPR001005 -
Vvi4g0173 226 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vvi4g0173 226 FunFam MYB-related transcription factor 12 65 - -
Vvi4g0173 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vvi4g0173 226 SMART sant 65 113 IPR001005 -
Vvi4g0173 226 SMART sant 12 62 IPR001005 -
Vvi4g0173 226 MobiDBLite consensus disorder prediction 114 152 - -
Vvi4g0173 226 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vvi4g0173 226 Gene3D - 70 141 - -
Vvi4g0173 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vvi4g0173 226 Pfam Myb-like DNA-binding domain 16 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0173 Vvi-Chr4 1467631 1468488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0173 13 125 MYB Transcription Factor Family AT5G40330 62.832 1.50e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g0173 Myb_DNA-bind_6 7.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0173 K09422 - vvi:100261180 486.108