Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0172 ATGGGAGTGAATCACTCTTCAAACCCTGCTCTTGAAATGGGCAGACCTCCTTGCTTTGAAGATGGATTGAATAAGGGGGTTTGGACTGCTCATGAGGATGAAGTTCTTGGAAATTATGTTAAATTGCATGGCGAAGGGAAGTGGGTTAATGTTGCCAAGGCAACAGGACTTAAGCGATCTGCTAAGAGTTGTAGGCTTCGTTGGCTGAATTATCTGAAACCCGACATCAAAAGGGGTAACATTGCTCTTGATGAAGAGGATCTCATCATCAGGCTACACAGGCTCTTGGGCAACAGATGGTCCCTGATAGCTAAAAGGCTTCCAGGCAGAACAGATAACGAAATCAAGAACTATTGGCACTCAACCTTGAAAAAGAAAGTGCAAGAGAGCAGCTCAAATCACTGCAAAAGCAAGAAGAAACCCATGATGGAGCCATCTGCTGAATCTGCAGAATCACTGAAGATGGATTCATGTCTGAGCCCCAACAAAGATGTAATTAATTGTACTACCAGTAGTAGTGCTCATCCTTTTCCTCTACTGTTTCCTGTTGATGAACATCCTGAAGCTTTCACGCCTGTGGAACCCTCCATTGATGGAGGATTGGGGAAGGAAATAGTAGCAGAACAACCACCAGAGTCTGGTGATGAGATTTTCCCAGTTAATATCAGTTGTGGAAATGATGCTTTGTGGGACTCCTTGATGGACTTTGATGTTGACCAGCTTTGCCTTTCTGAAATTCTTGAAGAGAATTTCGCTAGCTTCAGTGAATTTGATAGTATGACTGTGGGGGAATGTGGGATTAATGGCTGCCAAGATGATCCATTGCCTTCATTTTCAGACCTCGGCTAA 849 0.4382 MGVNHSSNPALEMGRPPCFEDGLNKGVWTAHEDEVLGNYVKLHGEGKWVNVAKATGLKRSAKSCRLRWLNYLKPDIKRGNIALDEEDLIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWHSTLKKKVQESSSNHCKSKKKPMMEPSAESAESLKMDSCLSPNKDVINCTTSSSAHPFPLLFPVDEHPEAFTPVEPSIDGGLGKEIVAEQPPESGDEIFPVNISCGNDALWDSLMDFDVDQLCLSEILEENFASFSEFDSMTVGECGINGCQDDPLPSFSDLG* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0172 282 Gene3D - 25 77 - -
Vvi4g0172 282 FunFam Myb transcription factor 25 77 - -
Vvi4g0172 282 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 152 - -
Vvi4g0172 282 CDD SANT 84 123 IPR001005 -
Vvi4g0172 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Vvi4g0172 282 Pfam Myb-like DNA-binding domain 28 85 - -
Vvi4g0172 282 FunFam Transcription factor TT2 81 151 - -
Vvi4g0172 282 SMART sant 24 74 IPR001005 -
Vvi4g0172 282 SMART sant 77 125 IPR001005 -
Vvi4g0172 282 CDD SANT 28 72 IPR001005 -
Vvi4g0172 282 Gene3D - 82 150 - -
Vvi4g0172 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Vvi4g0172 282 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
Vvi4g0172 282 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Vvi4g0172 282 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0172 Vvi-Chr4 1464945 1466252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0172 13 156 MYB Transcription Factor Family AT4G34990 53.793 1.41e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g0172 Myb_DNA-bind_6 8.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0172 K09422 - vvi:100266387 590.112