Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0171 ATGCTTTATATATATGCAGGTCTTAAAAGATGTGGGAAGAGTTGCAGGCTTAGATGGTTGAATTATTTGAGACCAGATATCAAGAGAGGCAACATATCGCTGGAGGAAGAAGATCTCATCATTAGGCTCCACAAGCTCTTAGGCAACAGATGGGCTTTAATAGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACAACCTTGAGGAAAAAGGTGAATGGGAAACAACCAAATCATGAGTCTAAAGACGAGAAGAAGAAATCAAGTATCAAAGAGTCTATCGAGAAGAACCCGCCGCCATCTACTATGGTTGAATCCCAAGTGATTCGAACAAAGGCTTCACGCTGTAATAAAGTTTTCATCTCACAACCCCAAAAACTCCAAAACCTTGACAATGGAGTTGCAGCAAAAGAAGACTCCATGAATTGCAGACCAAAGGCCATTCCCTCAAACACTTCCGGAGAAGATGATTCCTTTAACGGCACCATGGACTTTGATGTGGGGGAGTTTTTCATGTCTGATATTTCAGATTCAGACCTCTGGAAGCTGTTCCAGTTTGATAACAACAGTAATACTGTAAAGGAAGATGGCAACAACAATGACGGTTTTCCCTTCTCTTCTGCAGACCAGCCTGGTCTATTCTCTGAGGAAATGATCAAAGACTGGATCAGGGATGATGAGTCTTAA 705 0.4241 MLYIYAGLKRCGKSCRLRWLNYLRPDIKRGNISLEEEDLIIRLHKLLGNRWALIAGRLPGRTDNEIKNYWNTTLRKKVNGKQPNHESKDEKKKSSIKESIEKNPPPSTMVESQVIRTKASRCNKVFISQPQKLQNLDNGVAAKEDSMNCRPKAIPSNTSGEDDSFNGTMDFDVGEFFMSDISDSDLWKLFQFDNNSNTVKEDGNNNDGFPFSSADQPGLFSEEMIKDWIRDDES* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0171 234 SMART sant 28 76 IPR001005 -
Vvi4g0171 234 SUPERFAMILY Homeodomain-like 9 80 IPR009057 -
Vvi4g0171 234 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Vvi4g0171 234 MobiDBLite consensus disorder prediction 79 99 - -
Vvi4g0171 234 FunFam Transcription factor TT2 32 102 - -
Vvi4g0171 234 CDD SANT 33 74 IPR001005 -
Vvi4g0171 234 Gene3D - 5 28 - -
Vvi4g0171 234 Pfam Myb-like DNA-binding domain 29 73 IPR001005 -
Vvi4g0171 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Vvi4g0171 234 MobiDBLite consensus disorder prediction 76 112 - -
Vvi4g0171 234 PANTHER MYB DOMAIN PROTEIN 55 6 200 - -
Vvi4g0171 234 Gene3D - 32 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0171 Vvi-Chr4 1456693 1457679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0171 1 231 MYB Transcription Factor Family AT5G35550 43.852 1.20e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi4g0171 Myb_DNA-binding 7.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0171 K09422 - vvi:100244051 460.299