Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0170 ATGGGGAGAGGTCCTTGCTGTAGTAAGGAGGGAATGAATAAAGGAGCCTGGACGGCCATTGAAGATGAGCTTCTTGTAGAGTATATCAAGGTCCATGGTGAAGGAAAGTGGAGTGGCATTCCAAAAAAATCAGGCCTTAAAAGATGTGGTAAGAGCTGCAGATTGAGGTGGTTGAATTATCTGAGACCTGATATCAAGAGAGGTAACATGTCTCCTGAAGAAGAAGACCTCATCATTAGGCTCCACAAGCTCTTGGGCAACAGGTGGTCTCTGATAGCTGGAAGAATTCCAGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACCAACTTCGCCAAGAAAGCTCCAGCAAGACAAACCTCAAGCTCAGAGAAAAATCCCATCATGATAACTTCTCCTCCATCAGATTTGCTTCCTCCAAATCTACAGCAACAGCAATTCACCAATGTTTGGGCCACTCCACTGCAGCCTGAACTTGAATTCGAAGCACTGCCACCACCCATGGATCAAAACTTCTCCAAAACTACTGCATCAGAGCCCCAATTCACTGACAATTCACCAGACATCATAATGGATTTAAACCCCGGGGAAATTAGTGTGTCAGAGATTTTTAACGATGACTTTATAAATTTTAATGATTTTGAAGCATCTGAAATGAGAAATATCGATAATAGGTGCAATACTCAAGTGCAGGAAATTGCTGAAAACTGGGCGGCCAGTGACTGCCTTGATCAAGCTCAGTATTACATGGGTTCAGATTTTTCACCATTGGCCTTTCTCTTTGAGTCTGAGGGGTGGGTTGGAGATGATGATGTAAATGTTGTTTGA 831 0.4332 MGRGPCCSKEGMNKGAWTAIEDELLVEYIKVHGEGKWSGIPKKSGLKRCGKSCRLRWLNYLRPDIKRGNMSPEEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEIKNYWNTNFAKKAPARQTSSSEKNPIMITSPPSDLLPPNLQQQQFTNVWATPLQPELEFEALPPPMDQNFSKTTASEPQFTDNSPDIIMDLNPGEISVSEIFNDDFINFNDFEASEMRNIDNRCNTQVQEIAENWAASDCLDQAQYYMGSDFSPLAFLFESEGWVGDDDVNVV* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0170 276 CDD SANT 69 112 IPR001005 -
Vvi4g0170 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 133 - -
Vvi4g0170 276 CDD SANT 16 61 IPR001005 -
Vvi4g0170 276 Gene3D - 14 66 - -
Vvi4g0170 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi4g0170 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi4g0170 276 SMART sant 66 114 IPR001005 -
Vvi4g0170 276 SMART sant 13 63 IPR001005 -
Vvi4g0170 276 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vvi4g0170 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi4g0170 276 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi4g0170 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi4g0170 276 FunFam Transcription factor TT2 70 135 - -
Vvi4g0170 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi4g0170 276 Gene3D - 70 131 - -
Vvi4g0170 276 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0170 Vvi-Chr4 1439817 1440839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0170 1 144 MYB Transcription Factor Family AT4G38620 62.500 5.26e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g0170 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0170 K09422 - vvi:100254320 568.926