Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0165 ATGGGGTTGGGACGGCCCGAGACATCCGGTTCGGTCGACCCAAGAGACACAACCGGAGAAGTGGGCCGGACCACAGCTGCAGAACCGTCCGGTTCACGGCGATTCCCGCTGGCGGCTCAGCCGGAAATAATGAGAGCTGCCGAGAAGGATGACCAGTACGCCTCCCACGTCTACGAAGCCTGTCGCGACGCTTTTCGCCATCTCTTTGGGACAAGAGTTGCTGTAGCTTACCAGAGCGAGACAAAACTTTTGGGACAGATGCTTTATTATATCTTAACAACAGGTTCAGGGCAGCAGACACTGGGTGAAGAATATTGTGACATCACTCAGGTTGCGGGACCTTATGGACTTTCGCCAACACCAGCCAGGCGTGCTCTTTTCATTTTATACCAGACTGCAGTTCCTTATATTGCAGAAAGAGTCAGCTCTAGAGTTGCGGCCCGTGGCATAGCCATTGCTGATGCACAGGCTGATGAGCTTTATGGAAACAATGTTCCTGGGAGCAGTCAAGTTCAGTCTTCTGCAATTACTGAAATTCCATCTTCTTCGGCATCAGGGGCATCTCTTTCAGTTCTTTCAAGGTTGAAGGAGAAATTCAATCAATCATGGTTGTATGCAGTTCAGAGGTGGCCTGTGGTACTTCCCTTAGCTCGTGAGTTCTTGCAATTGGTTCTTCGTACTAATCTAATGTTCTTCTACTTTGAAGGCTTATATTATCATATCTCGAAACGTGCAGCAGGCATTCGTTATGTCTTCATTGGAAAATCATTGAATCAAAGGCCTAGATATCAAATATTGGGAGTATTCCTTTTAATTCAGCTATGTATCATTGCCGCTGAAGGATTACGGCGCAGGAATTTATCTTCTATTGCAAGTTCAGTTCATCGTACCCCCTTAGGGGCTCACCAAACTGCAACAGGGCAAGGTTTGCCTGTTTTAAATGAAGAAGGCAATTTGATAGCAGCTGATGCTGATAAGGGAAGTTGGGTCTCTGATTCCACATATGTAGAGTCTCAAGCAAGTGGGGTCAGCAAATGCACGCTCTGCCTGAGTAATCGCCAACACCCAACAGCCACACCTTGTGGTCATGTATTCTGTTGGAGTTGCATTATGGAATGGTGCAATGAAAAGCCTGAATGTCCACTCTGCCGCACACCCTTGACTCATTCAAGCCTAGTTTGTTTATATCATTCAGACTTCTAG 1203 0.4705 MGLGRPETSGSVDPRDTTGEVGRTTAAEPSGSRRFPLAAQPEIMRAAEKDDQYASHVYEACRDAFRHLFGTRVAVAYQSETKLLGQMLYYILTTGSGQQTLGEEYCDITQVAGPYGLSPTPARRALFILYQTAVPYIAERVSSRVAARGIAIADAQADELYGNNVPGSSQVQSSAITEIPSSSASGASLSVLSRLKEKFNQSWLYAVQRWPVVLPLAREFLQLVLRTNLMFFYFEGLYYHISKRAAGIRYVFIGKSLNQRPRYQILGVFLLIQLCIIAAEGLRRRNLSSIASSVHRTPLGAHQTATGQGLPVLNEEGNLIAADADKGSWVSDSTYVESQASGVSKCTLCLSNRQHPTATPCGHVFCWSCIMEWCNEKPECPLCRTPLTHSSLVCLYHSDF* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0165 400 MobiDBLite consensus disorder prediction 1 37 - -
Vvi4g0165 400 SMART ring_2 346 383 IPR001841 -
Vvi4g0165 400 Pfam Ring finger domain 345 384 IPR001841 -
Vvi4g0165 400 CDD RING-HC_PEX10 344 395 - -
Vvi4g0165 400 SUPERFAMILY RING/U-box 345 389 - -
Vvi4g0165 400 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 36 398 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vvi4g0165 400 FunFam Peroxisome biogenesis factor 10 322 397 - -
Vvi4g0165 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 397 IPR013083 -
Vvi4g0165 400 ProSitePatterns Zinc finger RING-type signature. 361 370 IPR017907 -
Vvi4g0165 400 Pfam Pex2 / Pex12 amino terminal region 50 284 IPR006845 -
Vvi4g0165 400 ProSiteProfiles Zinc finger RING-type profile. 346 384 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0165 331 396 C3H Transcription Factor Family AT4G28270 32.927 2.87e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0165 K13346 - vvi:100262831 800.045