Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0161 ATGTCGGAGAAGAAGGAAACGGGCGGAGCTGAAGTTGTCGTGACGATTTCAGCTGAGAGTAAAGAGGCTAATGCCAACACAAAAGGGTCTTCGCCTATGGATTCGGAGACTTCAGCTCCAAGACGGAGCGGTCAGGGGGTGACGGAGGCGAAAACACAGCCTCACTGCCCTTCGCCGGAGATTGCTGGATTCACCGGGAGCCCGCACAAGCCTCCGAAAATCCCCACTTCGGAAGCCCTAGCTCGCCGGCGATCAGTGGCAAAATCGGTGTACTCGAGGTCTAAATCGAGATTTGGAGACCCCCCAGTTGATATCAACTATTTTGAGAATAACAATGGGATACTGCAAGAACAGATTGGTGGGTCTTCGTCTTACAGGTCTTATAGGGCGTCACCCGGTAGCAAACCCGGTAGTAGAGCAGTTTCCATCAATCAGAGAACTCCGTTGATGGCGTCTCCAGGTGGGGTTGAGGATGATGATGAGGAGATATACAAGAGAGTGAATAGTACTGAATGGAATAAGGAGAAGCATAGGAGAGTGAAGGTTAAGGTTTTGGTTGAGTGGATTGCATCTTTGGTGATTTTGGGGTTCTTGGTGGCTAGTTTAACCATTGACAAGTTGGAGAAAACTATGATTTGGGGCTTGGAGCTCTGGAAATGGTGTGTGCTTGTAATGGTGATCTTCTCAGGTATGTTGGTTACCAAATGGATTATGAACTTTATTGTTTTCCTGATTGAAAGGAACTTTTTGCTGAAGAAGAAAGTTCTGTATTTTGTTCATGGTTTGAAGAAGAGTGTTCAGGTCTTTATTTGGTTGGCCTTGATTCTTGTTACATGGGTTTTGTTGTTCGATCGAGGGGTTAAACGATCATACACTACCACCAAGATTCTGAATTCTGTGACATGGACTCTAGTTACTCTGCTCATTGGGAGTTTCTTTTGGCTGCTGAAGAATCTATTGCTAAAGATATTGGCGTCTGCTTTCCATGTCACTACATTTTTCGATAGGATTCAGGTCTCGGTTTTCCACCAGTATGTTCTTCAAACCCTTTCAGGGCCTCCACTTATGGAGTTAGCCCAGATGGTTGGGAAAGAACCCAGTGCTGGTCGATTGAGTTTTAGGAGTATAAAGAAAGGTAAAAAATCCAAAGAAAAAAAGTTGATTGATATGGGAGAGATTCATAGGATGAAGCGAGAAAAGGTCTCTGCTTCGGTCATGAAGGAATTGGTTGATGTGATATTGAGTTCTGGGCTTCCCACAATATCGGATACCCTTGAAAGCATTGCTAAAGAAGGTGAACAGGCGGATAAGGAGATTACTAATGAGATGGAAGCGATCGCAGCTTCATATCACATATTCAGGAATGTTTGTCAGCCTGGTTTCTCGTACATTGAGGAGGAGGACCTTTTGAGATTCATGATTAAAGAGGAGGTGGATCATGTGTTGCCACTGTTTGAAGGAATGGAGAATGGACGAATCGAAAGAAAAGTACTCACCAACTGGGTGGTGAAGGCTTACAACGACAGGAAAGCACTAGCACATGCTCTAAATGACACCAAAACAGCTGTAAAGCAATTGAACAAGGTTGTGTCAGGGGTTGTAATTGTTGTCGTCCTCATTGTGTGGCTTCTTTTGATGGAAATTGCAACTACAAAAGTTCTTGTCCTCCTCTCGTCCCAGCTTGTAGTGGCTGCTTTTATGTTTGGAAACACCTGCAAGACAATTTTTGAAGCTATCATATTTGTCTTTGTGATGCATCCATTTGATGTTGGTGACCGTTGTCTCGTTGATGGTGTCCAGTTGATAGTTGATGAGATGAACATCTTAACAACAGTCTTCTTGAAAATTGATCGCGAAAAGGTGTACTATCCAAATTCTGTTTTGGCTACCAAGCCCATCAGCAACTTCTACAGAAGCTCGCCTATGGGTGATAATGTGGAGTTCTCTATTGCATTTGCAACCACAGCAGAAAAGATCGGGGCTCTAAAAGAAAGAATAGCAAAGTACCTGGAGAGAAATCCCCAATACTGGTTTCCTGCCCACACTCTGGTAGTAAAGGAGATTGAGAATGTCAACAAGATCAAGATGACTCTATTTGTCAATCACACCATCAACTTCCAAGACTATCCAGAGAAGACTAATCGGAGAACCGAACTGGTGTTAGAGCTGAAGAAAATATTTGAAGACCTAGATATCACATACTACCTCCTGCCCCAAGAAATTCAGATCTCTAATACCACCACGCCAGCCACAATACACGGGCATGCCACCAAACATCTGTGA 2283 0.4393 MSEKKETGGAEVVVTISAESKEANANTKGSSPMDSETSAPRRSGQGVTEAKTQPHCPSPEIAGFTGSPHKPPKIPTSEALARRRSVAKSVYSRSKSRFGDPPVDINYFENNNGILQEQIGGSSSYRSYRASPGSKPGSRAVSINQRTPLMASPGGVEDDDEEIYKRVNSTEWNKEKHRRVKVKVLVEWIASLVILGFLVASLTIDKLEKTMIWGLELWKWCVLVMVIFSGMLVTKWIMNFIVFLIERNFLLKKKVLYFVHGLKKSVQVFIWLALILVTWVLLFDRGVKRSYTTTKILNSVTWTLVTLLIGSFFWLLKNLLLKILASAFHVTTFFDRIQVSVFHQYVLQTLSGPPLMELAQMVGKEPSAGRLSFRSIKKGKKSKEKKLIDMGEIHRMKREKVSASVMKELVDVILSSGLPTISDTLESIAKEGEQADKEITNEMEAIAASYHIFRNVCQPGFSYIEEEDLLRFMIKEEVDHVLPLFEGMENGRIERKVLTNWVVKAYNDRKALAHALNDTKTAVKQLNKVVSGVVIVVVLIVWLLLMEIATTKVLVLLSSQLVVAAFMFGNTCKTIFEAIIFVFVMHPFDVGDRCLVDGVQLIVDEMNILTTVFLKIDREKVYYPNSVLATKPISNFYRSSPMGDNVEFSIAFATTAEKIGALKERIAKYLERNPQYWFPAHTLVVKEIENVNKIKMTLFVNHTINFQDYPEKTNRRTELVLELKKIFEDLDITYYLLPQEIQISNTTTPATIHGHATKHL* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0161 760 Pfam Mechanosensitive ion channel 527 732 IPR006685 GO:0016020|GO:0055085
Vvi4g0161 760 Gene3D - 587 636 IPR023408 -
Vvi4g0161 760 FunFam Predicted mechanosensitive ion channel 587 636 - -
Vvi4g0161 760 MobiDBLite consensus disorder prediction 1 96 - -
Vvi4g0161 760 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 747 IPR016688 -
Vvi4g0161 760 MobiDBLite consensus disorder prediction 19 52 - -
Vvi4g0161 760 SUPERFAMILY Sm-like ribonucleoproteins 577 636 IPR010920 -
Vvi4g0161 760 PIRSF Memb_At2g17000 2 756 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0161 Vvi-Chr4 1350689 1354187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0161 24 744 Mechanosensitive Ion Channel Family AT5G12080 59.534 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0161 K22048 - vvi:100245659 1441.4