LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g0160	ATGTATACTAATGGCAATACCAACAAGAAGACCACCATTTTCAGCCCACGCATAACGTCTCCCGCGTCTGCCTCTTCCTCAGGCAAGCAAGGAAAGCATGGCACAGCCCAGGTCCAGACGTGTTGCTTTGGGAAGTGTGTGAAAATGGGTTCCAGTGTTTCACAACCCCACCAACAAAACCAGCAGGCTACAGCCAAAGTTGAGCAGCAGCAGGAGCGGCATGGAGAGCAGAGCAGCAAGAATGGGAAAAGCACGGAAAAGCCTCAGAATCGTCCAAGTCCTCGGACCCCCACACCTGTTCACCACCAACTAGAAACTCTCATCGATGAAGCCAAGAACAGCGGATGGTACATTGAGCCCCATGAGATTGAATTTCAAGAGCTAGTAGCCGAAGGAAGCACCGCACGTGTCTACAAAGGAACATGGCGAGGCCTGGACGTTGCAGTCAAATGCATATTCCCCGAATACTTCCACAACAATGAAGGAGCTGTCCTCTTCTTCACCCAGGAGCTCGACACCTTATCGCGGCAGCGCCACAGATCCGTGCTCCAACTCATGGGCGCCTGCCTTCGTCCACCAGACCATGGGTGGCTGGTGACGGAGTTCTTGAGCACGACACTGAAGGAGTGGCTGCACGGGAGGGGGGAGAGAGGAGAAGAGAGGACAGCCCCTCTTCCACCGTTTTGGGAGAGGTTGGCGAAGGCCCTGGAGATTGCGGAAGCGATGCAGTACCTGCATGACCAAAGGCCTATGGTGATTCATCGCGATTTAAAGCCAAGTAATATATTTTTGGACGATGCCAAGCACGTAAGGGTTGCAGACTTCGGCAATGCTCGGTTCCTGTGCGACGGAGAAAAGGCCCTCAGTGGTGAAACAGGGACTTTCGTATACATGGCACCCGAAGTGACTCGGTCTCAGCCTTATAACGAAAAGTGTGATGTGTTCAGTTTCGGGATCATCCTCAATGAGCTCATCACCGGGGAATATCCGTACGTTGAGACCGAGTACGGACCTTTCCAGATTGCATCCGGGGTGTGTGGACAGGAGAAGCTAAGGCCTGCACTTCCAAAGAAAGATGGGCAAATAATGAAAGAGCTCATCCATCTTATTCTCCTTTCATGGAATGAAAATCCTTCGATTAGACCATCTTTTGCAAAAATCGCCTCCACTTTGAAGAGGATTCAGAGCCAACCCTTTGAATCCATTCCCATATGA	1215	0.5144	MYTNGNTNKKTTIFSPRITSPASASSSGKQGKHGTAQVQTCCFGKCVKMGSSVSQPHQQNQQATAKVEQQQERHGEQSSKNGKSTEKPQNRPSPRTPTPVHHQLETLIDEAKNSGWYIEPHEIEFQELVAEGSTARVYKGTWRGLDVAVKCIFPEYFHNNEGAVLFFTQELDTLSRQRHRSVLQLMGACLRPPDHGWLVTEFLSTTLKEWLHGRGERGEERTAPLPPFWERLAKALEIAEAMQYLHDQRPMVIHRDLKPSNIFLDDAKHVRVADFGNARFLCDGEKALSGETGTFVYMAPEVTRSQPYNEKCDVFSFGIILNELITGEYPYVETEYGPFQIASGVCGQEKLRPALPKKDGQIMKELIHLILLSWNENPSIRPSFAKIASTLKRIQSQPFESIPI*	405

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi4g0160	404	MobiDBLite	consensus disorder prediction	1	33	-	-
Vvi4g0160	404	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	252	264	IPR008271	GO:0004672\|GO:0006468
Vvi4g0160	404	CDD	STKc_MAP3K-like	129	391	-	-
Vvi4g0160	404	SUPERFAMILY	Protein kinase-like (PK-like)	91	390	IPR011009	-
Vvi4g0160	404	ProSiteProfiles	Protein kinase domain profile.	123	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi4g0160	404	MobiDBLite	consensus disorder prediction	52	100	-	-
Vvi4g0160	404	SMART	serkin_6	123	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi4g0160	404	Pfam	Protein tyrosine and serine/threonine kinase	123	391	IPR001245	GO:0004672\|GO:0006468
Vvi4g0160	404	MobiDBLite	consensus disorder prediction	52	68	-	-
Vvi4g0160	404	Gene3D	Phosphorylase Kinase; domain 1	103	204	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi4g0160	Vvi-Chr4	1335005	1338118	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g0160	116	394	MAP Kinase Kinase Kinase	AT4G35780	36.429	1.28e-49	174

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-8	Vvi4g0160		PK_Tyr_Ser-Thr	3.3e-41	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g0160	-		-	vvi:100250799	833.172

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