Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0160 ATGTATACTAATGGCAATACCAACAAGAAGACCACCATTTTCAGCCCACGCATAACGTCTCCCGCGTCTGCCTCTTCCTCAGGCAAGCAAGGAAAGCATGGCACAGCCCAGGTCCAGACGTGTTGCTTTGGGAAGTGTGTGAAAATGGGTTCCAGTGTTTCACAACCCCACCAACAAAACCAGCAGGCTACAGCCAAAGTTGAGCAGCAGCAGGAGCGGCATGGAGAGCAGAGCAGCAAGAATGGGAAAAGCACGGAAAAGCCTCAGAATCGTCCAAGTCCTCGGACCCCCACACCTGTTCACCACCAACTAGAAACTCTCATCGATGAAGCCAAGAACAGCGGATGGTACATTGAGCCCCATGAGATTGAATTTCAAGAGCTAGTAGCCGAAGGAAGCACCGCACGTGTCTACAAAGGAACATGGCGAGGCCTGGACGTTGCAGTCAAATGCATATTCCCCGAATACTTCCACAACAATGAAGGAGCTGTCCTCTTCTTCACCCAGGAGCTCGACACCTTATCGCGGCAGCGCCACAGATCCGTGCTCCAACTCATGGGCGCCTGCCTTCGTCCACCAGACCATGGGTGGCTGGTGACGGAGTTCTTGAGCACGACACTGAAGGAGTGGCTGCACGGGAGGGGGGAGAGAGGAGAAGAGAGGACAGCCCCTCTTCCACCGTTTTGGGAGAGGTTGGCGAAGGCCCTGGAGATTGCGGAAGCGATGCAGTACCTGCATGACCAAAGGCCTATGGTGATTCATCGCGATTTAAAGCCAAGTAATATATTTTTGGACGATGCCAAGCACGTAAGGGTTGCAGACTTCGGCAATGCTCGGTTCCTGTGCGACGGAGAAAAGGCCCTCAGTGGTGAAACAGGGACTTTCGTATACATGGCACCCGAAGTGACTCGGTCTCAGCCTTATAACGAAAAGTGTGATGTGTTCAGTTTCGGGATCATCCTCAATGAGCTCATCACCGGGGAATATCCGTACGTTGAGACCGAGTACGGACCTTTCCAGATTGCATCCGGGGTGTGTGGACAGGAGAAGCTAAGGCCTGCACTTCCAAAGAAAGATGGGCAAATAATGAAAGAGCTCATCCATCTTATTCTCCTTTCATGGAATGAAAATCCTTCGATTAGACCATCTTTTGCAAAAATCGCCTCCACTTTGAAGAGGATTCAGAGCCAACCCTTTGAATCCATTCCCATATGA 1215 0.5144 MYTNGNTNKKTTIFSPRITSPASASSSGKQGKHGTAQVQTCCFGKCVKMGSSVSQPHQQNQQATAKVEQQQERHGEQSSKNGKSTEKPQNRPSPRTPTPVHHQLETLIDEAKNSGWYIEPHEIEFQELVAEGSTARVYKGTWRGLDVAVKCIFPEYFHNNEGAVLFFTQELDTLSRQRHRSVLQLMGACLRPPDHGWLVTEFLSTTLKEWLHGRGERGEERTAPLPPFWERLAKALEIAEAMQYLHDQRPMVIHRDLKPSNIFLDDAKHVRVADFGNARFLCDGEKALSGETGTFVYMAPEVTRSQPYNEKCDVFSFGIILNELITGEYPYVETEYGPFQIASGVCGQEKLRPALPKKDGQIMKELIHLILLSWNENPSIRPSFAKIASTLKRIQSQPFESIPI* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0160 404 MobiDBLite consensus disorder prediction 1 33 - -
Vvi4g0160 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Vvi4g0160 404 CDD STKc_MAP3K-like 129 391 - -
Vvi4g0160 404 SUPERFAMILY Protein kinase-like (PK-like) 91 390 IPR011009 -
Vvi4g0160 404 ProSiteProfiles Protein kinase domain profile. 123 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0160 404 MobiDBLite consensus disorder prediction 52 100 - -
Vvi4g0160 404 SMART serkin_6 123 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0160 404 Pfam Protein tyrosine and serine/threonine kinase 123 391 IPR001245 GO:0004672|GO:0006468
Vvi4g0160 404 MobiDBLite consensus disorder prediction 52 68 - -
Vvi4g0160 404 Gene3D Phosphorylase Kinase; domain 1 103 204 - -
Vvi4g0160 404 Gene3D Transferase(Phosphotransferase) domain 1 205 398 - -
Vvi4g0160 404 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 55 395 - -
Vvi4g0160 404 MobiDBLite consensus disorder prediction 82 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0160 Vvi-Chr4 1335005 1338118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0160 116 394 MAP Kinase Kinase Kinase AT4G35780 36.429 1.28e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vvi4g0160 PK_Tyr_Ser-Thr 3.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0160 - - vvi:100250799 833.172