Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0136 ATGGCTGACACAACTGCTGGGTCACAGGACTCACCGGAGGCCGAGAGTGATTTTGAGCTTGGTGACACTTCAAATTTTGAGCTTTCTGAGTACTTGTTGTTTGATGATCTCATGGAGGAAGATCATTCAGCATTCCTGGCATCCGAGTTTGCCCAGAATCCAATTCACCCCGGAAATGAAGTTGACAAACCTGGAAGCAGCAGCAGCCAACATGAAAGACCTGCCAGCAGAAACAGTGAGAGTGGGCAGAAGAAGAAAGAAGCTAAAGAAAGGGTTGCATTTATTACAAAATCTGAGATTGAAATCCTGGATGATGGGTTCAAATGGAGGAAGTACGGAAAGAAGATGGTGAAGAACAGCCCAAATCCAAGGAACTATTACAGGTGTTCAGTTGATGGATGCAATGTGAAGAAGAGAGTTGAAAGAGATAGGGAGGATCCCAAGTATGTGATAACAACATATGAGGGCATCCATAACCACGAAAGCCCTTCTAAGTTCTGA 501 0.4451 MADTTAGSQDSPEAESDFELGDTSNFELSEYLLFDDLMEEDHSAFLASEFAQNPIHPGNEVDKPGSSSSQHERPASRNSESGQKKKEAKERVAFITKSEIEILDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCNVKKRVERDREDPKYVITTYEGIHNHESPSKF* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0136 166 MobiDBLite consensus disorder prediction 1 22 - -
Vvi4g0136 166 Gene3D WRKY domain 90 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0136 166 SUPERFAMILY WRKY DNA-binding domain 95 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0136 166 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 164 IPR044810 GO:0003700
Vvi4g0136 166 MobiDBLite consensus disorder prediction 48 90 - -
Vvi4g0136 166 FunFam WRKY transcription factor 57 89 163 - -
Vvi4g0136 166 ProSiteProfiles WRKY domain profile. 98 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0136 166 MobiDBLite consensus disorder prediction 62 76 - -
Vvi4g0136 166 Pfam WRKY DNA -binding domain 104 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0136 166 SMART WRKY_cls 103 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0136 Vvi-Chr4 1210142 1211252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0136 2 162 WRKY Transcription Factor Family AT5G26170 50.581 1.97e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi4g0136 WRKY 2.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0136 - - vvi:100266400 343.584