Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0130 ATGGAGGAGATGTCTCCGGCGGTTGCTGTGCCATTTAGATTAGGTAATTCAGTCTGTGATAACCCAACTGTAGCTAGCCATATGGATGTCACAAGATTTAAGCTCATGACGGATGCAACGAGCTTGTTATCTGATTCTGCAACCCAGGTTTCTACTGAGTCTATTGCTGGTGAAGATGATAACTGCAGTGATCTGGAGAATGAGGTTAGTGTTGTAGCGGTGTCAGTACCGGTGGAGAATAGGGAAGAGGGAGCTGCTTTGTTGGATATGGTATCTGAAAATAAGAGCAATTGGGTTGCTGGTGATGATGTTGTAATCCGGGAAAGCGAGGAGGATGATTTCTTATCAGTTGAGGGTGATCCTATTTTGGATAGCTCTTGTTCTCTTTCTGTGACAAGTGAGACTAGTAGCATATGTGGTGAGGATTTGTTAGCATTCGAGGCTAATTTTGAGACAGGAACGCCGGGTTCTTTAGATATTGAGAAGGACGGTTGCAATGATCCGATTATTGCTAAGTCATCTCATTTGGGGGAATTGAATGCTGAGCAGGAGATTGTGAGTGATTCCCTTGCAGTGACCAGTCTTGAGGAAGAAATTGGATTTAGACCTGAACTGAAATCATCTGAAGTTGTTATTCAGTTGCCTGTGGAAAAAGGGGTAAGTGGAACACTTGTTCGTAGTGTGTTTGAGTTGGTTTATGTGCCCCTTTGGGGATTTACGTCTATCTGTGGAAGGAGACCTGAGATGGAAGATGCAGTTGCAACCGTGCCTCGGTTTTTTCAGATCCCTATTCAAATGCTAATTGGCGATCGAGTAATTGATGGCATGAGCAAGTGTGTCAGTCATTTAACGGCCCATTTCTTCGGGGTTTATGACGGTCATGGAGGGTCTCAGGTTGCAAACTATTGTCGCGATCGCATCCATTCTGCTTTGGCCGAGGAAATAGAGACTGCCAAGACAGGATTTAGTGATGGAAATGTTCAGGATTATTGCAAAGAGCTGTGGACCAAAGTGTTCAAAAATTGTTTTCTTAAGGTTGATGCTGAGGTTGGAGGAAAGGCTAGTCTTGAACCTGTTGCTCCAGAAACCGTTGGTTCTACTGCTGTTGTTGCCATTATTTGTTCATCCCATATCATTGTGGCAAATTGTGGTGATTCAAGGGCAGTCCTGTACCGTGGTAAAGAACCTATAGCTTTATCGGTCGATCATAAGCCAAATCGAGAAGATGAATATGCAAGGATTGAGGCAGCTGGAGGCAAAGTCATACAGTGGAATGGGCATCGAGTTTTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGGTATTTGAAACCGTGGATTATACCTGAACCAGAGGTGACATTTATTCCTCGGGCAAGAGAAGATGAATGCCTCGTTCTAGCAAGTGATGGGCTATGGGACGTGATGACGAATGAGGAGGTATGTGATATAGCCCGAAGAAGAATACTCCTCTGGCACAAAAAGAATGGTGTGACGATGCTCCCCTCAGAAAGAGGCCAGGGGATCGACCCTGCAGCTCAAGCAGCAGCAGAGTGCCTCTCAAACCGGGCTCTTCAGAAGGGAAGCAAGGACAACATCACAGTGATTGTGGTGGATTTGAAGGCTCAGAGGAAGTTCAAGAGCAAAACCTGA 1656 0.4511 MEEMSPAVAVPFRLGNSVCDNPTVASHMDVTRFKLMTDATSLLSDSATQVSTESIAGEDDNCSDLENEVSVVAVSVPVENREEGAALLDMVSENKSNWVAGDDVVIRESEEDDFLSVEGDPILDSSCSLSVTSETSSICGEDLLAFEANFETGTPGSLDIEKDGCNDPIIAKSSHLGELNAEQEIVSDSLAVTSLEEEIGFRPELKSSEVVIQLPVEKGVSGTLVRSVFELVYVPLWGFTSICGRRPEMEDAVATVPRFFQIPIQMLIGDRVIDGMSKCVSHLTAHFFGVYDGHGGSQVANYCRDRIHSALAEEIETAKTGFSDGNVQDYCKELWTKVFKNCFLKVDAEVGGKASLEPVAPETVGSTAVVAIICSSHIIVANCGDSRAVLYRGKEPIALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFIPRAREDECLVLASDGLWDVMTNEEVCDIARRRILLWHKKNGVTMLPSERGQGIDPAAQAAAECLSNRALQKGSKDNITVIVVDLKAQRKFKSKT* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0130 551 ProSiteProfiles PPM-type phosphatase domain profile. 236 541 IPR001932 -
Vvi4g0130 551 PANTHER PROTEIN PHOSPHATASE 180 541 IPR015655 GO:0004722|GO:0006470
Vvi4g0130 551 FunFam Protein phosphatase 2C 16 224 551 - -
Vvi4g0130 551 SUPERFAMILY PP2C-like 226 542 IPR036457 -
Vvi4g0130 551 SMART PP2C_4 226 539 IPR001932 -
Vvi4g0130 551 ProSitePatterns PPM-type phosphatase domain signature. 287 295 IPR000222 GO:0043169
Vvi4g0130 551 Pfam Protein phosphatase 2C 273 534 IPR001932 -
Vvi4g0130 551 CDD PP2Cc 238 541 IPR001932 -
Vvi4g0130 551 Gene3D - 223 551 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0130 Vvi-Chr4 1179166 1182805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0130 1 551 PP2C-type Phosphatase Gene Family AT1G17550 50.444 1.76e-175 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0130 K14497 - vvi:100242262 1075.46