Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0128 ATGGAGGAGGGGAGCGGCGAAGAGGAGGTGCTGGGGTCGAGCTTGACTATGGAGAAGGTGGCGGCAGCGAAGCAGTTCATAGAGAACCACTACAGAACTCAGATGAAGACCATCCAAGAGCGGAAGGAGAGACGCTGGGTTTTAGAAAGAAGATTGGCTTCTTCAGATGTGCCAAAGGAGGAACAGATCAACTTGATAAAGGATTTAGAGCGGAAAGAAACAGAGTTTATGCGACTTAAGAGGCACAAAATATGTGTTGATGATTTTGAGCTCCTGACCATCATTGGTAGAGGAGCCTTTGGTGAGGTTCGTCTATGTCGGGAGAAGAAATCTGAAAATATTTATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTTATACGAGGACAGGTGGAACATGTTAGAGCTGAGAGAAATTTGCTGGCGGAAGTTGCCAGTCACTGCATAGTGAAACTGTACTACTCATTTCAAGATGCTGAGTACCTATATCTGATTATGGAATATCTGCCTGGTGGTGACATGATGACTCTGCTGATGAGAGAAGACACCCTGTCTGAAAGTGTGGCTAAATTTTACATTGCCCAGAGTGTCCTGGCAATAGAGTCGATTCACAAACATAACTACATTCACAGGGATATCAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTTTGTAAGCCTCTTGATTGCAGAACCTTGTCTGCACTGAAGGAGGATGAAGTAATGGATGATGAGAATTCAAGGGAATCAATGGATATTGATGGAGGCTTCCCTGATGCGGATAATAGAAGTAGTTGGAAAAGTCCTCGTGAGCAGCTTCAGCATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACGGTGGGGACACCTGACTATATTGCTCCTGAAGTATTATTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTAGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCTCCATTTTACTCAGACGATCCCATGACCACATGCAGAAAGATTGTTCATTGGAAAAATCATCTAAAATTCCCAGAAGATCCAAAATTAACCGCTGAGGCGAAGGATCTCATTTATAGGTTGCTTTGTGATGTTGAACATAGGCTAGGCACTGGAGGGGTGGGCCAAATTAAAGCTCATCCTTGGTTCAAGGATGTTGTATGGGATAAACTCTATGAGATGGAGGCTGCATTTAAACCAGAAGTCAATGGGGAGCTAGATACTCGGAATTTTATGAAGTTTGATGAACTGGATCCTCCAACACAGGCAAGAAGTGGCTCGGGACCCTCACGGAAGATGCTATTAACTCCTAAAGATTTGAGTTTTGTTGGCTATACATACAAGAACTTTGATGCTCTCAAAGGGCTTCGCCCTTCTTCTGGTGATGCTAGAGCAGATTATACTGCTAGGGAGACAGCTGATGATACAGATGTGCAGATGCTTGCTCCATCAGGCGATCCCATGTCACCATAA 1512 0.4358 MEEGSGEEEVLGSSLTMEKVAAAKQFIENHYRTQMKTIQERKERRWVLERRLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSENIYAMKKLKKSEMLIRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLSESVAKFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCRTLSALKEDEVMDDENSRESMDIDGGFPDADNRSSWKSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVHWKNHLKFPEDPKLTAEAKDLIYRLLCDVEHRLGTGGVGQIKAHPWFKDVVWDKLYEMEAAFKPEVNGELDTRNFMKFDELDPPTQARSGSGPSRKMLLTPKDLSFVGYTYKNFDALKGLRPSSGDARADYTARETADDTDVQMLAPSGDPMSP* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0128 503 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Vvi4g0128 503 MobiDBLite consensus disorder prediction 469 503 - -
Vvi4g0128 503 FunFam Non-specific serine/threonine protein kinase 173 240 - -
Vvi4g0128 503 ProSiteProfiles AGC-kinase C-terminal domain profile. 397 470 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi4g0128 503 SUPERFAMILY Protein kinase-like (PK-like) 73 443 IPR011009 -
Vvi4g0128 503 CDD STKc_NDR_like 87 461 - -
Vvi4g0128 503 MobiDBLite consensus disorder prediction 253 274 - -
Vvi4g0128 503 FunFam Non-specific serine/threonine protein kinase 295 414 - -
Vvi4g0128 503 SMART serkin_6 89 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0128 503 FunFam Non-specific serine/threonine protein kinase 50 172 - -
Vvi4g0128 503 ProSiteProfiles Protein kinase domain profile. 89 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0128 503 Gene3D Phosphorylase Kinase; domain 1 80 174 - -
Vvi4g0128 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vvi4g0128 503 CDD MobB_NDR_LATS-like 23 84 - -
Vvi4g0128 503 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 431 - -
Vvi4g0128 503 SMART pkinase_C_6 397 462 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi4g0128 503 Pfam Protein kinase domain 90 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0128 503 Pfam Protein kinase domain 288 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0128 503 Gene3D Transferase(Phosphotransferase) domain 1 175 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0128 Vvi-Chr4 1148006 1165769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0128 2 501 AGC Kinase Gene Family AT4G33080 79.681 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vvi4g0128 Pkinase 2.1e-42 CL0016