Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0125 ATGTCGTCTGTATACGTATCAGAGCCGCCGACGAAGGGGAAAGTGATAGTGACGACGACGTACGGTCCTTTGGATATCGAGCTTTGGCCCAAAGAGGCTCCCAAAGCGGTTAGAAACTTCGTCCAGCTCTGCCTCGAAGGCTACTATGATAACACCATCTTTCACCGCATCATCAAAGGATTTCTAGTTCAAGGCGGCGACCCCACAGGCTCCGGCACCGGTGGGGAGAGTATCTATGGGAGTGCATTTGCTGATGAGTTCCATTCACGGCTAAGGTTCAACCATCGGGGCTTAGTTGCATGTGCAAATGCTGGCTCACCAAATTCGAATGGGAGTCAGTTCTTTATATCCTTGGATCGTTGTGATTGGCTTGATCGGAAGAATACCATTTTTGGAAAGGTAACTGGGGATTCATTGTATAATCTTCCAAGATTAGGTGATGTTGAAATTGATAAAAATGATCGACCAGTTGATCCACCCCCAAAGATTATCTCTGTTGAGGTATTATGGAATCCGTTTGATGATCTTGTTCCAAGAAAGACACTTGCAAAGTCTTTGCCCCATTCCACTAATGATATTGACAACAAAGATCTGAAAAAGAAAGCTGTAAAAAAGCTGAATTTGCTTTCATTTGGAGAAGAAGCTGAAGAAGAGGAGAAAGAATTGGAAGCTGTTAAGCAAAAGATAAAGAGTAGTCATGATGTACTAAATGATCCTCGTCTCCTCAAGGGGGAAATTCCAAGTAAAGAATTGAACCCTTCGGAAGTCAAAATAAACAAGGATTTGCAGTTATCTGTGAGGGAAGCTCTGAGCGCGAAGAAAGAAGAATCATGGAAAGAATCAGAATCTGAATTTTCTAACTTCCTTGACCATAGTGATGATGATGAGGCAAACTTTGATGCACGAATGCGTCAACAGATCCTAAGAAAAAGGAAGGAGCTTGATGATCTACCAACAAAGCAAAAGTTGAACAAAGGGAATAGCAACTTGAAGGACCACGAAACCTCTACTCCAAGGTCCAGTGCTGAAACCTTTGATGACCGGCCAAAAGTAGAAAAGCTGGCATTGAGGAAAAAGGGAATAGGCTCGGAAGCCAGAGCTGAACGCATGGCTAAAGCAGATGCAGACCTACAGCTTTTGGGTGAAGCTGAACAGCAAAGACAGTTGCAGAAACAGAAGAAGCGCAGACTACAAGGACGTGAAGATGAAGTGCTAGCAAAACTGCAGAGGTTTCAAAAGAAGATTTCTGCAAAACCTGTTGCCTCAGAAACCGAGTCTAGGGTTGAAGGTGATGAAGATGATGATATATATAGCTTGAGAGGAACTCAGCTAAAGTTTACACCAGAGCCTGGCAAGGACCGCATGTCACGTAGTGATGACCCAAATGACTATGTGGTGCATGACCCTCTTTTGGAGAAAGGGAAGGAGAAGTTCAACAAGATGCAAGCCAAGCAAAAACGACGGGAACGTGAATGGGCTGGCAAATCTCTTACATAA 1497 0.4389 MSSVYVSEPPTKGKVIVTTTYGPLDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKGFLVQGGDPTGSGTGGESIYGSAFADEFHSRLRFNHRGLVACANAGSPNSNGSQFFISLDRCDWLDRKNTIFGKVTGDSLYNLPRLGDVEIDKNDRPVDPPPKIISVEVLWNPFDDLVPRKTLAKSLPHSTNDIDNKDLKKKAVKKLNLLSFGEEAEEEEKELEAVKQKIKSSHDVLNDPRLLKGEIPSKELNPSEVKINKDLQLSVREALSAKKEESWKESESEFSNFLDHSDDDEANFDARMRQQILRKRKELDDLPTKQKLNKGNSNLKDHETSTPRSSAETFDDRPKVEKLALRKKGIGSEARAERMAKADADLQLLGEAEQQRQLQKQKKRRLQGREDEVLAKLQRFQKKISAKPVASETESRVEGDEDDDIYSLRGTQLKFTPEPGKDRMSRSDDPNDYVVHDPLLEKGKEKFNKMQAKQKRREREWAGKSLT* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0125 498 Gene3D - 2 183 IPR029000 -
Vvi4g0125 498 SUPERFAMILY Cyclophilin-like 14 182 IPR029000 -
Vvi4g0125 498 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 220 IPR044666 -
Vvi4g0125 498 MobiDBLite consensus disorder prediction 321 335 - -
Vvi4g0125 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vvi4g0125 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Vvi4g0125 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Vvi4g0125 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Vvi4g0125 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Vvi4g0125 498 MobiDBLite consensus disorder prediction 413 498 - -
Vvi4g0125 498 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Vvi4g0125 498 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Vvi4g0125 498 Coils Coil 380 414 - -
Vvi4g0125 498 CDD cyclophilin_CeCYP16-like 8 180 - -
Vvi4g0125 498 MobiDBLite consensus disorder prediction 450 498 - -
Vvi4g0125 498 MobiDBLite consensus disorder prediction 310 351 - -
Vvi4g0125 498 Coils Coil 208 235 - -
Vvi4g0125 498 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Vvi4g0125 498 MobiDBLite consensus disorder prediction 336 351 - -
Vvi4g0125 498 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0125 Vvi-Chr4 1119730 1127582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0125 9 173 U-box Gene Family AT5G67530 47.273 4.81e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0125 K12737 - vvi:100267905 933.324