LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g0124	ATGGCTCTTCACTTTGCTTTTGATGATGGCATTGCACCGATAAACTCTACTGTTGTCGCCATCGATAAAGACAAGAATAGCCACTATGCTGTTCGATGGACAATTGATCATCTCTTAATCAACAATCCACAAATTATTCTGATTCATGTTAGACATAAATACTTGCAACATCAGGGTTACAATGCTGGTGAGGGTGGGGGTGAGTCTGAAACTGATGCACAACAACTTTTCATTGCATATCGAGGGTATTGTGCTCGCAAAGCGATTCAACTGAAAGAGATTGTTCTTGATGATGTTGATGTGTCTCGAGCCATTATAGACTACATCACCAGGAACCGCATCAAGAATATCGTTGTGGGAGCGTCAACCAAGAATGCCCTTACAAGGAAGTTTAGGAACTATGATGTGTCAACCAGCATAACGAAATCTGCACCAGACTTCTGTTCTGTATATGTCATTTCAAAAGGGAAGGTGGTCTCGGTCCGGTCGGCGCAAAGGCCAGTGGTTAACACTGCAGTCCCACCAAAGCTGCCATCTCCTAGAGGACTTCCCCCTCAAGCTCTACCTGATAACCCAGAGCTTGAAGATGTAGCCAGAATTCAATCTTTGAAGGGGTGGAGAAATGTAGGATCAGAGAGGGTTACCTTTGAAAGGACCAACAACAACATGAGGGTGCCAAGAGCCAGGAGTGCCCCAACCAATCTCTCCATTGATAATATTGATTTGCAAAGGCCTTCAACTAGTCGGGATTCTGTTTCGGATGATCTTGATTTCTCGACCCCAATTAGGTTTGCATCAGTTGATTTGAGTAGCCAGGACATGGATTTCTCCATTACGTCAGACTCAGGCAGAGACTCCCTCACCCCAACATCTGCAAAAGAATTAGCTGCTGAGATGAAAAGATTAAAGCTTGAACTGAAGCAAACCATGGACATGTACAGCACAGCTTGCAAAGAAGCAATAACAGCTAAACAGAAGGCTAAAGAGCTTCATCAATGGAGGATGGAGGAGGCTAGGAGATTTAAGGAAGCCAGGCTTTCTGAGGAGGCAGCACTTGCCATGGCAGAGATGGAGAAGGCAAGGTGCAAAGCTGCCATAGAAGCAGCTGAGGTAGCACAGAAACTAGCTGAGAAGGAAGCACAAAGAAGAAGGTATGCAGAGTTGAAGGCTTCAAGGGAGGCGGAAGAGAAGGCACGGGCATTGACTGCTTTGGCTCATAATGATGTCCGCTATAGGAAATACGCCATAGAAGAGATTGAAGTAGCCACTGAGAAATTCTCTCAGGCCATGAAAATTGGGGAAGGTGGATATGGCCCAGTTTATAGAGGCAAACTTGATCATACCCCTGTTGCCATCAAAGTTTTGAGACCTGATGCTGCACAAGGGATGAGGCAATTCCAACAGGAGATTGAGGTTCTAAGCTGCATGAGACATCCAAACATGGTTCTTCTCCTAGGTGCCTGTCCTGAGTATGGATGCCTGGTATATGAATACATGAGCAATGGCAGCTTGGAAGATCGGCTTTTGAGAAGAGGTGACACCCCATCAATTCCATGGAGAATGAGATTCAAAATAGCAGCAGAGATTGCCACTGCACTTCTATTCCTCCACCAGGCAAAGCCAGAGCCTTTTGTGCACAGAGACCTAAAGCCAGCCAACATCCTCCTAGATCGAAACTATGTGAGCAAAATCAGCGATGTTGGCCTAGCCAGGTTAGTTCCTCCTTCTGTGGCTGATAGTGTGACACAATACCACATGACTTCAGCTGCAGGGACATTTTGTTACATTGATCCAGAGTATCAACAAACAGGTATGCTAGGGACTAAATCTGATGTATACTCTATGGGCATAATGCTTCTCCAAATTATCACTGCCAAGCCCCCAATGGGCCTTACTCACCATGTTAGAAGGGCCATTGAGAAAGGGACATTCGCGGATATGCTTGATCAGACAGTTCCTGACTGGCCGGTTGAAGAGGCGCTGGCTTTTGCCAACCTAGCACTAAAATGTTCTGAGCTGAGGAAAAAGGACAGGCCTGATCTTGGTTCTGTTGTATTGCCAGAGCTTAACCGGTTGAGTGGCTTTGGCATGGACAGTTCTGGACCAGATAACAGTAGTAACATGTTTAATGGCTATGCGTCGTATACTCACAGATCCGGTTCACATCCAAGGCTCTCAAGTACTGCAAGCCAGGACTAA	2199	0.4593	MALHFAFDDGIAPINSTVVAIDKDKNSHYAVRWTIDHLLINNPQIILIHVRHKYLQHQGYNAGEGGGESETDAQQLFIAYRGYCARKAIQLKEIVLDDVDVSRAIIDYITRNRIKNIVVGASTKNALTRKFRNYDVSTSITKSAPDFCSVYVISKGKVVSVRSAQRPVVNTAVPPKLPSPRGLPPQALPDNPELEDVARIQSLKGWRNVGSERVTFERTNNNMRVPRARSAPTNLSIDNIDLQRPSTSRDSVSDDLDFSTPIRFASVDLSSQDMDFSITSDSGRDSLTPTSAKELAAEMKRLKLELKQTMDMYSTACKEAITAKQKAKELHQWRMEEARRFKEARLSEEAALAMAEMEKARCKAAIEAAEVAQKLAEKEAQRRRYAELKASREAEEKARALTALAHNDVRYRKYAIEEIEVATEKFSQAMKIGEGGYGPVYRGKLDHTPVAIKVLRPDAAQGMRQFQQEIEVLSCMRHPNMVLLLGACPEYGCLVYEYMSNGSLEDRLLRRGDTPSIPWRMRFKIAAEIATALLFLHQAKPEPFVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLGTKSDVYSMGIMLLQIITAKPPMGLTHHVRRAIEKGTFADMLDQTVPDWPVEEALAFANLALKCSELRKKDRPDLGSVVLPELNRLSGFGMDSSGPDNSSNMFNGYASYTHRSGSHPRLSSTASQD*	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g0124	732	Gene3D	Phosphorylase Kinase; domain 1	403	498	-	-
	Vvi4g0124	732	SMART	serkin_6	426	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g0124	732	Pfam	Universal stress protein family	18	145	IPR006016	-
	Vvi4g0124	732	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	399	498	-	-
	Vvi4g0124	732	Coils	Coil	343	398	-	-
	Vvi4g0124	732	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	544	556	IPR008271	GO:0004672\|GO:0006468
	Vvi4g0124	732	MobiDBLite	consensus disorder prediction	171	191	-	-
	Vvi4g0124	732	MobiDBLite	consensus disorder prediction	697	732	-	-
	Vvi4g0124	732	Gene3D	HUPs	13	153	IPR014729	-
	Vvi4g0124	732	Gene3D	Transferase(Phosphotransferase) domain 1	499	695	-	-
	Vvi4g0124	732	SUPERFAMILY	Protein kinase-like (PK-like)	410	685	IPR011009	-
	Vvi4g0124	732	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	17	153	-	-
	Vvi4g0124	732	MobiDBLite	consensus disorder prediction	173	187	-	-
	Vvi4g0124	732	Coils	Coil	292	312	-	-
	Vvi4g0124	732	Pfam	Protein kinase domain	427	680	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g0124	732	CDD	STK_N	16	156	-	-
	Vvi4g0124	732	ProSiteProfiles	Protein kinase domain profile.	426	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g0124	732	PANTHER	OS02G0152300 PROTEIN	18	700	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi4g0124	Vvi-Chr4	1115013	1118921	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g0124	91	699	Receptor kinase-like Gene Family	AT5G12000	64.677	0.0	771

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vvi4g0124		Pkinase	1.9e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g0124	-		-	vvi:100254330	1416.36