Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0119 ATGTCTCGAATGAAACATCTGCTCCGAAAACTCCATATCGGAGGAAGCCTCAATGAGCACCAACGGATACCCGAGACCCGACCCGTGATCAATCCGAGTCCGAGTCCGAATCAGTCATCCCCCGTGGCCGCGGCGGCTCCATCGTCGGCATTGGGGAGCGTGGGAGGCGGTGATGCGGTGGATCGGGCGGCGGTGGATTCACAAGATGCTGCAGTCGATTTCAGTTTCCTGGAGGAGGAGTTTCAGGTACAGCTGGCTCTGGCCATATCCGCCTCGGATCCCGATGCGCGAGATGACCGAGAGACGGCTCAGATCAAAGTAGCCAAGCGGATTAGCTTGGGGTGTTCGCCGTCCACGACCGACACTGAAACCCTAGTTGAGTTGCTCTCGCTTCGATACTGGAACTATAATGCTGTAAACTACGATGAAAAAGTGATGGATGGGTTTTATGATGTATATGGTATTACTGCAAATTCAGTTGTGCAAGGAAAGATGCCATTGCTCGTTGATCTACAAGCAATTTCTGTTCTGGATAATGTTGATTATGAAGTGATTTTGGTAGACCGCATGATTGATCCTGATCTGCGAGAACTTGAGGATAAAGCTTATTCTTTGTCCATGGAGTACCAAGTTTCTGATCAGTTGACTATTTTAGATGGGTTGGTCCAGAAAATTGCAGATATGGTTGTTGAGAGAATGGGTGGTCCTGTTGGTGATGCTGATGAAATGTTGAAAAGATGGACTATCAGAAGTTATGAGTTGCGGAGTTCTCTGAACACTATCATCCTTCCCCTTGGACGGCTGGATATTGGGCTTTCACGCCATAGGGCCTTGCTCTTTAAGGTGCTAGCTGATAGGATTAATCTTCCATGTCTGCTGGTTAAAGGGAGCTACTACACGGGTACTGATGACGGGGCCATAAACCTGATTAAAATTGATAATGGAAGTGAATATATAATTGATCTAATGGGTGCCCCGGGTGCTCTAATTCCTGCTGAGGTACCCAGTAGTCATCATCAAAATTTTGGACTAGATGTAAGGAGCTGTACAGATGTTATAGAAGCTGCCCGAGAATCACTTCTAGTGCCTGAAAAAGGAACTGGATTTTCACCTAATCTTGATGTAGTTTCCAAGCCTGGCAGTTCAAAGTCAGAAGAAGCACCATTTATAGGCATTCGATCGAAAGGGGATGACAGGAGTCCTGTTGAAAAATTTGAAACTGAGAGATTTGAAAATGAATTTGGGAACCTTCTTCCTTCACTACGTAAATTATGTGAAGGCTCATCGGGAACCTGTGGGAAAGCATCACCTGCACAAAAGATGAAAGTTAAAGATGTTTCCAAATATGTCATCAGTGCAGCAAAAAACCCAGAATTCGCACAGAAACTACATGCTGTTTTATTAGAGAGTGGTGCATCGCCTCCACCAGATTTGTTTTCGGATATAAATTCCCGGGGTCAGGTAGAGCAGAAAGTCCTTGAGCAAATCCATATGGCAAAAGGGAAACAAGTGGATCATGGGGTTTGGTATTCTCCTGGTGAGTTTTTGTTGAACAGTGAGCAACCTCTCATGCCCTCTCACCAGGTGGAAACAAATGTCACCAACTCAGACTTCTCTTTGCCTTCTGATACTACAAGTGAGGGATTTATACTTATTGGTGCTGGAGCTAATGGAATGATCCGCACTAATGCTACAGGAGAAACATGCCAAAGACAACCTGAAAATGCCTTAGTTAGTGATGGTGGACCCTGCTTTCAGGATAATATAGGGAGAATTCTTAGTAACATTGGAACAGAGAAGGAATCTGCTTTGGGATTAATGGAAACAGCCAACGGTGCCTTGCATATTCCTTCCAATGCTCACAGTGAGCAGATCAACCCAATGCTGGCTGAGGTTGCGGAATGGGAAATCCCATGGGAGGATCTTCAGATTGGTGAACGTATTGGTATTGGCTCATATGGTGAGGTTTACCGAGCAGATTGGAATGGCACTGAGGTTGCTGTGAAGAAGTTCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGGTTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAAGGGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAAGAGGAGATTGCGAATGGCTCTTGATGTGGTATTAGTTTCAATATCTTGTCTTTTTCTTTGTCCCCTCTATGCAGTTCAACTCCTTTTTCTATTAAAGCTTCCAAATTACTTGCAGGCCAAGGGAATGAATTACTTGCACACAAGCCATCCTACTATTGTACATAGAGATCTGAAATCTCCAAATCTCCTTGTTGATAAAAACTGGGTTGTTAAGGTTTGTGATTTTGGGTTGTCACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACGCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAAGTGTGATGTGTATAGCTTCGGTGTGATACTATGGGAGTTGGCTACCTTGCGCATCCCATGGAGTGGGATGAATCCGATGCAGGTTGTTGGAGCTGTTGGATTTCAAGACAGACGCCTAGAAATCCCAGAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGTTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCATCTTCAGCATCTGGTGTTTGAAAGAGCAAGCTCTTCAAGACAAGCACAAGTGCAATAG 2832 0.4484 MSRMKHLLRKLHIGGSLNEHQRIPETRPVINPSPSPNQSSPVAAAAPSSALGSVGGGDAVDRAAVDSQDAAVDFSFLEEEFQVQLALAISASDPDARDDRETAQIKVAKRISLGCSPSTTDTETLVELLSLRYWNYNAVNYDEKVMDGFYDVYGITANSVVQGKMPLLVDLQAISVLDNVDYEVILVDRMIDPDLRELEDKAYSLSMEYQVSDQLTILDGLVQKIADMVVERMGGPVGDADEMLKRWTIRSYELRSSLNTIILPLGRLDIGLSRHRALLFKVLADRINLPCLLVKGSYYTGTDDGAINLIKIDNGSEYIIDLMGAPGALIPAEVPSSHHQNFGLDVRSCTDVIEAARESLLVPEKGTGFSPNLDVVSKPGSSKSEEAPFIGIRSKGDDRSPVEKFETERFENEFGNLLPSLRKLCEGSSGTCGKASPAQKMKVKDVSKYVISAAKNPEFAQKLHAVLLESGASPPPDLFSDINSRGQVEQKVLEQIHMAKGKQVDHGVWYSPGEFLLNSEQPLMPSHQVETNVTNSDFSLPSDTTSEGFILIGAGANGMIRTNATGETCQRQPENALVSDGGPCFQDNIGRILSNIGTEKESALGLMETANGALHIPSNAHSEQINPMLAEVAEWEIPWEDLQIGERIGIGSYGEVYRADWNGTEVAVKKFLAQDFSGDALVQFRYEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLYRLLHRSNIQLDEKRRLRMALDVVLVSISCLFLCPLYAVQLLFLLKLPNYLQAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRLKHHTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRIPWSGMNPMQVVGAVGFQDRRLEIPEEVDPMVAQIINDCWEVEPRKRPSFSQLMSRLKHLQHLVFERASSSRQAQVQ* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0119 943 CDD STKc_MAP3K-like 648 923 - -
Vvi4g0119 943 FunFam PAS domain-containing protein tyrosine kinase family protein 769 940 - -
Vvi4g0119 943 FunFam Serine/threonine-protein kinase isoform 1 633 720 - -
Vvi4g0119 943 MobiDBLite consensus disorder prediction 15 51 - -
Vvi4g0119 943 SUPERFAMILY Protein kinase-like (PK-like) 637 921 IPR011009 -
Vvi4g0119 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Vvi4g0119 943 Gene3D Transferase(Phosphotransferase) domain 1 720 943 - -
Vvi4g0119 943 ProSiteProfiles Protein kinase domain profile. 642 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0119 943 PRINTS Tyrosine kinase catalytic domain signature 831 841 IPR001245 GO:0004672|GO:0006468
Vvi4g0119 943 PRINTS Tyrosine kinase catalytic domain signature 784 802 IPR001245 GO:0004672|GO:0006468
Vvi4g0119 943 PRINTS Tyrosine kinase catalytic domain signature 850 872 IPR001245 GO:0004672|GO:0006468
Vvi4g0119 943 PRINTS Tyrosine kinase catalytic domain signature 894 916 IPR001245 GO:0004672|GO:0006468
Vvi4g0119 943 PRINTS Tyrosine kinase catalytic domain signature 716 729 IPR001245 GO:0004672|GO:0006468
Vvi4g0119 943 Pfam Ethylene-responsive protein kinase Le-CTR1 127 330 - -
Vvi4g0119 943 Pfam Protein tyrosine and serine/threonine kinase 642 923 IPR001245 GO:0004672|GO:0006468
Vvi4g0119 943 ProSitePatterns Protein kinases ATP-binding region signature. 648 670 IPR017441 GO:0005524
Vvi4g0119 943 MobiDBLite consensus disorder prediction 372 401 - -
Vvi4g0119 943 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 149 935 - -
Vvi4g0119 943 Gene3D Phosphorylase Kinase; domain 1 635 719 - -
Vvi4g0119 943 SMART serkin_6 642 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0119 Vvi-Chr4 1079913 1089984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0119 1 937 MAP Kinase Kinase Kinase AT5G11850 57.497 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vvi4g0119 PK_Tyr_Ser-Thr 3.4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0119 K04424 - vvi:100264622 1771.13