Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0117 ATGACTCCAGTTTTTCTGAACACTTCATCATCTTCTCCTTTTCCTGCTCTGGAGCTTAAAGAAGATCATCAACACTTCCAGCTCCTTTTTAGTACAAACCCACCATCATACCAAGCTTCTTCCTCTCACCCATGTCCTAGTTTCTTCAACTCAAGTACTCAATCTCAGAGAGGAGATCATAGCCCTAGAGACCCCCAACAGCATGAAGATAAGGATGATAAGTACATTTCCCATGGAGGATGTGGTGAAAGCCAAGTATTCTCATCTTCTTCACTCCTGCAGCCCATGGCGGATGACAATAAGAGCAGCCACAAATTGTCGGTTTTTAAGAAGGAAGAAGGAGATGAAGGTAATAAAAGTACTGAGAAATGGATGTCTTCAAAGATGAGGCTGATGAGAAAAATGATGAACTCGGATTGCACTACAGCGAAAATCGAGCAGAAGGTTGAAGATCATCAGCAGTGGGACAATATTAATGAGTTCAACTCTTCCAACAATACTAGTAATATCCCAATTAGAGTCTGCAGTGATTGTAACACAACCAAAACCCCTCTTTGGAGGAGCGGTCCTAGAGGTCCCAAGTCACTTTGCAATGCCTGTGGAATTAGGCAAAGGAAGGCGAGACGAGCCATGGCAGCAGCGGCAGCAGCAGCAGCGAATGGCACAGCCGTTGGGACCGAGATATCGCCTATGAAGATGAAGCTGCCCAACAAGGAAAAGAAGATGCATACAAGCAATGTAGGGCAACAGAAGAAGCTCTGCAAGCCCCCTTGTCCTCCTCCCACCGAGAAGAAGCTTTGCTTCGAAGATTTCACTTCGAGTATTTGCAAGAACTCAGGTTTTAGACGAGTGTTCCCTCGGGATGAAGAAGAAGCCGCGATCCTCCTAATGGCCTTATCTTGTGACCTTGTTTACAGTTGA 921 0.4549 MTPVFLNTSSSSPFPALELKEDHQHFQLLFSTNPPSYQASSSHPCPSFFNSSTQSQRGDHSPRDPQQHEDKDDKYISHGGCGESQVFSSSSLLQPMADDNKSSHKLSVFKKEEGDEGNKSTEKWMSSKMRLMRKMMNSDCTTAKIEQKVEDHQQWDNINEFNSSNNTSNIPIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAAANGTAVGTEISPMKMKLPNKEKKMHTSNVGQQKKLCKPPCPPPTEKKLCFEDFTSSICKNSGFRRVFPRDEEEAAILLMALSCDLVYS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0117 306 FunFam GATA transcription factor 21 169 251 - -
Vvi4g0117 306 CDD ZnF_GATA 174 206 IPR000679 GO:0006355|GO:0043565
Vvi4g0117 306 Gene3D - 167 253 IPR013088 GO:0006355|GO:0008270
Vvi4g0117 306 SMART GATA_3 169 220 IPR000679 GO:0006355|GO:0043565
Vvi4g0117 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 209 - -
Vvi4g0117 306 ProSiteProfiles GATA-type zinc finger domain profile. 173 205 IPR000679 GO:0006355|GO:0043565
Vvi4g0117 306 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Vvi4g0117 306 MobiDBLite consensus disorder prediction 30 80 - -
Vvi4g0117 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 305 - -
Vvi4g0117 306 MobiDBLite consensus disorder prediction 94 122 - -
Vvi4g0117 306 MobiDBLite consensus disorder prediction 103 122 - -
Vvi4g0117 306 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Vvi4g0117 306 MobiDBLite consensus disorder prediction 30 60 - -
Vvi4g0117 306 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0117 Vvi-Chr4 1062865 1064022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0117 123 305 C2C2-Gata Transcription Factor Family AT4G26150 38.164 1.22e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi4g0117 GATA 5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0117 - - vvi:100247474 584.334