Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0110 ATGGCGATGAGGCGACTGTGTGTGACAATTCTCATTTTCTCTCTCCTCCAACTTTCTCTCTGTAACCCTGACTTCACTGCCTTGCTGGCTTTCAAATCGTCTTCAGACCACTTCAATTCGCTCTCCTCCTGGTCCAATTCAACTCACCCCTGTTCCGGGTCGTGGCTCGGCGTCACCTGCAACAATGGCCAAGTCACCCACCTCGTTCTCGACCGCCTCAACCTCACCGGGTCCACTCGGGCCCTCTCTCGCCTCCCTCAGCTCCGGCTTCTTAGCCTCAACCACAACCGCCTCTCCTCTGTTGTCAACCTCTCTTCCTGGCCCAACCTCAAGCACCTCTACCTCTCTGACAACCGCTTCTCCGGAGAATTCCCCGCTGGCGTGTCCAGCATCCGTCGCATCCGGCGCCTCGTCCTCTCCCACAACAACTTCTCCGGAGAAATTCCGATGAATAAATTGACTCAGTTGCGTCACTTGCTAACCCTAAGACTCGAAGAGAATTCATTCACTGGCACGCTCTCGTCAAATTCTTCTTCTTCTTCAATTTACGATTTCAACGTCTCCGGCAACAATCTCGCCGGCGAAATCCCGGCATGGCTGTCGCAGTTCCCTTTGTCGTCGTTCGCCAGAAACGCGAAGCTATGCGGGAAGCCGTTGGGGTACAGTTGTTCGAATGGTCCCACAAAAACGAGTAAGAGAAAAAGGAGAGTGAGTGATGCACTGATCCTCGTGATCATCATCTTCGATGCGGTGGCGGGCGTGGGGATAATCATGACCGTTGGATGGTGCTGTTACAGGAGCATGAGCAGGAGGAGAACTGGGGTCCATAGAGAAATGGGGGGCTCTGATGGGGCACCCAGAGAAAGAAACGAGATGGTGATGTTTGAAGGGTGTAAGGGTTTCTCTAAGGTGGATGATCTGCTGAAGGCCTCTGCAGAGCTGCTGGGGAAGGGAAGCGTGGGGAGCACGTACAAGGTAGTGATGGAGGGCGGCGGTGTGGTGGCGGTGAAGAGAGTCAGAGAAGGGTTGAAAAGGAGGGAGATTGATGGATTGATGAAAGAAATTGGTGGGTTGAGGCATCGTAATATTGTGAGCCTCAGAGCATACTACTTTTCCAGAGATGAGTTGCTTTTGGTCTATGATTTTCTACCCAATGGAAGCTTGCATTCTCTCTTGCACGGGAATCGAGGACCAGGAAGGACCCCATTAGATTGGACCACAAGGTTGAAGCTGGCCTCAGGTGCTGCCAGAGGGCTAGCTTTCCTCCATGGCTGCAACAAATCCAAGCTCACCCATGGACACCTCACATCATCCAATATCATAGTTGACACCTCCGGCAATGCCTGCATTGCAGACATTGGTCTCCACCACTTCCTGCCTGCTCAGTCTTCATCATCAGACAACGCCTACACGCCACCAGAATTGGCGGTCAACCACCACCATGCCAAACTATCACAGAAAGCCGACGTCTACAGCTTTGGGGTTGTGCTGTTGGAGATTCTGACAGGGAAGATGGTGGTGGGGGAAGGGGAAACGAGCTTGGCGAAGTGGGTTGAGATGAGGCAGGAGGAGGAGTGGACATGGGAGGTGTTTGATTTTGAGCTGTGGAGGTATAAAGAGATGGAGCAGGAGATGAAGGCGCTTCTGCAGATTGCATTGCTGTGCTTGGCCCCTCTGCCTAGAGACCGCCCAAAGATGAGTATGATGCATAAGATGATAGAAGATATTAGAATGAAGGGTGGGCAGAAAGATGGGGTGGTTCATTCTCCTTTGTCTTCTGGGTATTCTTCTCAATCAGAAAGCACCCCCAACTTCACTAGCAGCTGA 1827 0.5233 MAMRRLCVTILIFSLLQLSLCNPDFTALLAFKSSSDHFNSLSSWSNSTHPCSGSWLGVTCNNGQVTHLVLDRLNLTGSTRALSRLPQLRLLSLNHNRLSSVVNLSSWPNLKHLYLSDNRFSGEFPAGVSSIRRIRRLVLSHNNFSGEIPMNKLTQLRHLLTLRLEENSFTGTLSSNSSSSSIYDFNVSGNNLAGEIPAWLSQFPLSSFARNAKLCGKPLGYSCSNGPTKTSKRKRRVSDALILVIIIFDAVAGVGIIMTVGWCCYRSMSRRRTGVHREMGGSDGAPRERNEMVMFEGCKGFSKVDDLLKASAELLGKGSVGSTYKVVMEGGGVVAVKRVREGLKRREIDGLMKEIGGLRHRNIVSLRAYYFSRDELLLVYDFLPNGSLHSLLHGNRGPGRTPLDWTTRLKLASGAARGLAFLHGCNKSKLTHGHLTSSNIIVDTSGNACIADIGLHHFLPAQSSSSDNAYTPPELAVNHHHAKLSQKADVYSFGVVLLEILTGKMVVGEGETSLAKWVEMRQEEEWTWEVFDFELWRYKEMEQEMKALLQIALLCLAPLPRDRPKMSMMHKMIEDIRMKGGQKDGVVHSPLSSGYSSQSESTPNFTSS* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0110 608 Gene3D Ribonuclease Inhibitor 130 220 IPR032675 -
Vvi4g0110 608 Gene3D Ribonuclease Inhibitor 24 129 IPR032675 -
Vvi4g0110 608 SUPERFAMILY L domain-like 23 205 - -
Vvi4g0110 608 SUPERFAMILY Protein kinase-like (PK-like) 313 573 IPR011009 -
Vvi4g0110 608 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Vvi4g0110 608 MobiDBLite consensus disorder prediction 586 608 - -
Vvi4g0110 608 ProSiteProfiles Leucine-rich repeat profile. 87 108 IPR001611 GO:0005515
Vvi4g0110 608 Pfam Leucine Rich repeats (2 copies) 86 120 IPR025875 -
Vvi4g0110 608 Gene3D Phosphorylase Kinase; domain 1 288 382 - -
Vvi4g0110 608 Pfam Protein kinase domain 313 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0110 608 ProSiteProfiles Protein kinase domain profile. 309 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0110 608 Gene3D Transferase(Phosphotransferase) domain 1 383 589 - -
Vvi4g0110 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 577 IPR046959 -
Vvi4g0110 608 MobiDBLite consensus disorder prediction 589 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0110 Vvi-Chr4 998252 1000178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0110 24 601 Receptor kinase-like Gene Family AT1G68400 45.781 9.66e-159 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi4g0110 Pkinase 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0110 - - vvi:100250812 1160.21