Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0109 ATGAAAGTGAGCGAAAGCGAACCGTCCGCCGCCGCCGGCCGTCACGGTTCCCAAGCTTGCGCTGCATGCAAGTATCAACGTAGAAAATGTAAACCCGAATGCCCATTAGCCCCGTTTTTTCCTTCGCATGATAAGGAGAGATTCCGTAACGTTCACAAGCTTTTTGGGGTGGCCAACGTCACCAAAATCCTCCAAGAAATTCCCCCCAGTTTCAGAGAAATCGCCATGAAATGTATTATCTATGATTCTTCTGCGCGTGCAATTGCACCAGTGGGTGGGCTGGGGGAGGTGGGTTTGGGTTTGGAGCAGTTGATTGCAGTTCACATGGCGGAATTGGAGGCGGTTCGTGGGCAACTCGAGGCATTTCGGGCCATGGAGAGAGCGAATGGGGAGGGGGGTTGTGATGCGTCGGCGCAGTGTGAAACGACGTCGTTTGTGTGTGGTGGGCAGTCGAGTATGGACGAGTGTGAAGGTGTGATGGAGGTCAGTGGTCATGGAGGCCTGTCACTGCGCTTTAACTCCTCCAGGTTTGAGTTCTTTGTCTGA 546 0.533 MKVSESEPSAAAGRHGSQACAACKYQRRKCKPECPLAPFFPSHDKERFRNVHKLFGVANVTKILQEIPPSFREIAMKCIIYDSSARAIAPVGGLGEVGLGLEQLIAVHMAELEAVRGQLEAFRAMERANGEGGCDASAQCETTSFVCGGQSSMDECEGVMEVSGHGGLSLRFNSSRFEFFV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0109 181 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Vvi4g0109 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 125 - -
Vvi4g0109 181 Pfam Lateral organ boundaries (LOB) domain 19 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0109 Vvi-Chr4 996291 996836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0109 18 145 AS2 family AT3G13850 46.565 3.44e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi4g0109 LOB 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0109 - - vvi:104878984 363.999