Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0103 ATGTTGAAGGGTTTGATGGTAGATGAGAATATGTCCAATTTGACTTCTGCATCTGGGGAAGCAAGTGCTTCTTCAGGTACCAGAAATGAAACAAGCAACATGTACCCACAACAGTCTTTTGTTTCAGCAAATCAAGCACCAGCAGCAGCAAAGAAGAAGAGAAGTCTTCCAGGCAATCCAGACCCAAATGCAGAAGTGGTAGCTTTATCACCCAAGACTCTCCAAGCAACCAACAGGTTTATATGCGAGATCTGTAACAAAGGGTTTCAGAGAGATCAGAACCTCCAGCTCCACAGAAGAGGCCACAATCTGCCATGGAAGCTGAAGCAAAGAACAAACAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAGCCTACATGTGTACACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGAATCAAGAAGCACTTTTCCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAAAAGTGCTCCAAGCGTTATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAGATTTGTGGCACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTAGCAGAAGAGAGTGCAAGGGCAATCACAGGAAACCCACTTCTCTCCTCACAACCTGGCTCTTCATCCTCCCATCTTAATCTCCAACCCCAACTCCATAGCCATGGTCTCCAAGCAGTACTGTCACTGAAAAGAGAACAAGAACAGCACCACAGTTTCAATCTAAAACCAGATATTCCACCATGGTTAGCTTGCCCACCAGTGCTTGAAGCAGGCCCAGGCCCCCCATCTATTGATCTCTCCTCCTCATTATTCTCTGCAAGTCTAGACCATCCCTTGATATACCATGAAAACCCTAACCCTAATTCCACGCTTCCATCTTTCCATCACACAGCTTCTCCACACATGTCTGCAACTGCATTGCTGCAACAAGCTGCACAGATGGGTGTAACAATGAGCAAGCCTTCTCCATCACCACCCATGCTCAGACCCCACCAAGCTCACATGTCTGCAGCCAATGCTGGTTTCAGTTCTACAGCAGTAGCCACATCTACAGCTGGTTCTGATCTGGGTTTGTCTTCACGTGATGAGATGGCAAGTGGGTTCATTCATGGCTTGGCTTCTTTTGGGAGTAAAGCTGCTGTTACCTCTGGTTTCATGGAACATGTAGCTACAGGAGCAGGAGCAGGAGCTGCAGCTCCTTCTCTATTTCATGACATGATGAGTTCTTTGTCTTCTGCCAGTGGGTTTGGAGGCCCATCTTTTGAAGAGGCTTTTAATGGGATGTTGAATCCAAAGAGAGAGAATAATCTTCAAGAAATCACCAAAACAGCAATGACAAAATCCCATTTCAGCAGAAGTGATCATGAAGGTGGTGGTGGCAATGATGGCTTGACAAGAGATTTCTTGGGTCTTAGAGCATTCTCTCATAGAGACTTTCTCAATATTCCTGGGCTTGATCAGATGAATTCTGCTTCTCCCTATGAGCAGCAGAATCAAAATCAAACACCTTGGCAAGGTTAG 1581 0.4617 MLKGLMVDENMSNLTSASGEASASSGTRNETSNMYPQQSFVSANQAPAAAKKKRSLPGNPDPNAEVVALSPKTLQATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGNPLLSSQPGSSSSHLNLQPQLHSHGLQAVLSLKREQEQHHSFNLKPDIPPWLACPPVLEAGPGPPSIDLSSSLFSASLDHPLIYHENPNPNSTLPSFHHTASPHMSATALLQQAAQMGVTMSKPSPSPPMLRPHQAHMSAANAGFSSTAVATSTAGSDLGLSSRDEMASGFIHGLASFGSKAAVTSGFMEHVATGAGAGAAAPSLFHDMMSSLSSASGFGGPSFEEAFNGMLNPKRENNLQEITKTAMTKSHFSRSDHEGGGGNDGLTRDFLGLRAFSHRDFLNIPGLDQMNSASPYEQQNQNQTPWQG* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0103 526 MobiDBLite consensus disorder prediction 9 45 - -
Vvi4g0103 526 FunFam protein indeterminate-domain 12-like 59 127 - -
Vvi4g0103 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Vvi4g0103 526 MobiDBLite consensus disorder prediction 1 64 - -
Vvi4g0103 526 Gene3D Classic Zinc Finger 134 213 - -
Vvi4g0103 526 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Vvi4g0103 526 MobiDBLite consensus disorder prediction 507 526 - -
Vvi4g0103 526 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
Vvi4g0103 526 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Vvi4g0103 526 Pfam Zinc-finger double-stranded RNA-binding 80 102 IPR022755 -
Vvi4g0103 526 Gene3D Classic Zinc Finger 59 127 - -
Vvi4g0103 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 506 IPR031140 -
Vvi4g0103 526 SMART c2h2final6 121 151 IPR013087 -
Vvi4g0103 526 SMART c2h2final6 80 102 IPR013087 -
Vvi4g0103 526 SMART c2h2final6 156 176 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0103 Vvi-Chr4 954501 956670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0103 7 339 IDZ Gene Family AT1G55110 58.807 2.00e-125 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi4g0103 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0103 K25870 - vvi:100257789 1038.1