Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0098 ATGGACGGAGTGATGGTCAAAGAAGAAGAACCAGTGGTTTCATGGACTATGGGCTCATCATCATCATCATCTTCTTCACCAGGCTTTGCTCCTCACCCATTGGAGGGTCTGCACGAGGTGGGTCCGCCTCCATTTCTTACGAAGACCTTCGATATGGTGGAAGACCCAGCAACCGACTCAGTGGTCTCGTGGAGTAGAGCTCGCAACAGCTTCATTGTTTGGGATTCGCACAAGTTCTCTACTACTCTTCTTCCCAGGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTTTTGGGAGGGCAGAAGCATCTGCTGAAGAACATCAAGAGAAGAAGACATGTCTCACAGAATACACAGCAAGGAGGACTAGGAGCTTGTGTGGAATTAGGGCAATACGGATTGGAGGATGAACTTGAAAGATTGAAGAGAGACAGAAACGTATTAATGGCAGAGATCGGGAAGCTGCGGCAGCAACAACAGAATTCCAGGAATGAACTAGTTGCCATGGAGGGTCGAATGCAGAACACAGAGAAGAAGCAGATGCAGATGATGACCTTTCTCGCCAAAGCATTAAACAACCCTTCCTTTGTCCAGCAATTTATCCAGCAGAGAAGGGAACTTCGAGGGGCTGAAATCGGGCGAAAACGACGATTAACCACCAGTCAAAGTGCTGAGAATTTGCAGGAAGTGATAACGGTGGCAAGCATCGACCAAGCGTTCAGCTACACAAATCAAGATGATGGGGACATGTCGGGTATTGAATCAGAGATAGAGACATTTTTCTCAGGCGGCTGGGACAATGAATCAAGTGAAGATATCAAGGACCCGAAAGCGGATTCCATTGATAACAACTTGGGTTCTGTCAATGATGTAATCTGGGAGGAACTATTGAGTGATGATCTGATTGCTGGCAATGAGGAAGAAGTACCCCCACTCCGACTGGGTGATCATCATGAACCAGAAACTGATGTGGAGGTGGAGGATTTGGTTGCAACGCCTTCAGACTGGGGCCAAACCTCAGATCCAGACTCGAAAGAAGGGTTCTCAATCTTTGACTCATTTTCAGAGCTATGGTCTCTGTCTCTGCCTCCTATAGGACTTCTGTATATTTATATTTTGTGTAAATATCAGTTGGTGTATCAGTATTATATGAACTGA 1227 0.4605 MDGVMVKEEEPVVSWTMGSSSSSSSSPGFAPHPLEGLHEVGPPPFLTKTFDMVEDPATDSVVSWSRARNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKNIKRRRHVSQNTQQGGLGACVELGQYGLEDELERLKRDRNVLMAEIGKLRQQQQNSRNELVAMEGRMQNTEKKQMQMMTFLAKALNNPSFVQQFIQQRRELRGAEIGRKRRLTTSQSAENLQEVITVASIDQAFSYTNQDDGDMSGIESEIETFFSGGWDNESSEDIKDPKADSIDNNLGSVNDVIWEELLSDDLIAGNEEEVPPLRLGDHHEPETDVEVEDLVATPSDWGQTSDPDSKEGFSIFDSFSELWSLSLPPIGLLYIYILCKYQLVYQYYMN* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0098 408 FunFam Heat shock transcription factor 1 38 135 - -
Vvi4g0098 408 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g0098 408 Gene3D - 38 135 IPR036388 -
Vvi4g0098 408 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 259 IPR027725 -
Vvi4g0098 408 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g0098 408 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g0098 408 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g0098 408 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g0098 408 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi4g0098 408 Coils Coil 161 202 - -
Vvi4g0098 408 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0098 Vvi-Chr4 921626 923810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0098 12 359 HSF AT2G26150 52.691 6.83e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi4g0098 HSF_DNA-bind 3.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0098 K09419 - vvi:100245740 723.776