Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0095 ATGGGTGGTTCGGGAAAATGGGTGAAAGCGCTGATAGGTCTCAAAAAGCCCGAGAAAGACGACCATGAGAAGGTGGGGGGTAAGAGCAAGAAATGGAGGCTGTGGAGGAGCTCATCAGGGGAAATGGGGTCTTCATGGAGGGGATTCAAAGGAGGGCATAGAGCTTACTCAGAGGGATCTGACTCTTCATCAGTGGGTACTGATGCTTTCACAGCTGCTGTAGCTACAGTGGTTCGAGCTCCACCCAAAGATTTTAGAGTTGTGAGGCAAGAATGGGCTGCAATCCGGATCCAGACTGCTTTTCGTGGCTTCTTGGCAAGAAGGGCTTTGAGGGCCTTGAAGGGAGTGGTTAGGCTTCAAGCTCTAGTTCGCGGCAGACAGGTCAGGAAGCAGGCTGCTGTGACACTAAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCCCGGGTTAGGGCTCGTCGTGTTAGAATGTCCATGGAGGGACAGGCTGTGCAGAAGTTGCTGGACGAGCGCCGCAGCCAGGCTGATCTCTTGAAAGAAGCTGAGGAAGGATGGTGTGATAGTAAGGGGACGTTGGCAGATGTTAAGACCAAGTTACAGATGAGGCAAGAGGGAGCCTTCAAGAGAGAAAGGGCAATTGCGTACTCTCTTGCTCAGAAGCAATGGAGATCAAGCCAGAATGCAAATTCCCAAACAAATGTCTCAGTGTCTTCAGTCAAGAATCACGAGCTTGATAAGAGTAGTTGGGGATGGAGTTGGTTAGAGCGTTGGATGGCGGCCAAGCCATGGGAGAACAGATTGATGGAGCAAGCCCACACTGATCCATCAGAGACAACTCCACCTTTTAAGCACTGTATGAACCCTCTCTCAGGCACCCATTCAAAATCTTCAGAACCAGGCTCAGTGAAGGTGAGAAGGAACAATGTAACTACCAGGATTTCTGCAAAACCTCCTCCAATTGGGTTAGTCACTCGGTCATCTTCAAGTCCAAGTTCTGAGTTTCAGTACGATGAAAGCTCAGCTTCATCTTCAATTTGCACATCTGCTACTCCTGTTTCTGGGAACACTGTCCTGACTTCAGATAAAACTGAGGACAGCAGTAACTATCGGCCAAGTTATATGAACCTGACCGAGTCGACCAAGGCAAAGCAGAGATCTCACAGAGTTCAAAGGCAGTCTATGGATGAATTTCAGTTTCTCAAGAAATCAGGGTTATACTGTAATGTAGATACAAAAAGCAGTGCTGGTTCTGATCCTCCATCAGTTAATTTCTCTAAGCCGCTTTACCTTCCAACCCGAATGGATAAAGCCTCTGTGAAGGTAAGGGAAAGGGAGAATTGCTTTTATGAGTAA 1350 0.483 MGGSGKWVKALIGLKKPEKDDHEKVGGKSKKWRLWRSSSGEMGSSWRGFKGGHRAYSEGSDSSSVGTDAFTAAVATVVRAPPKDFRVVRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQKLLDERRSQADLLKEAEEGWCDSKGTLADVKTKLQMRQEGAFKRERAIAYSLAQKQWRSSQNANSQTNVSVSSVKNHELDKSSWGWSWLERWMAAKPWENRLMEQAHTDPSETTPPFKHCMNPLSGTHSKSSEPGSVKVRRNNVTTRISAKPPPIGLVTRSSSSPSSEFQYDESSASSSICTSATPVSGNTVLTSDKTEDSSNYRPSYMNLTESTKAKQRSHRVQRQSMDEFQFLKKSGLYCNVDTKSSAGSDPPSVNFSKPLYLPTRMDKASVKVRERENCFYE* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0095 449 SMART iq_5 112 133 IPR000048 GO:0005515
Vvi4g0095 449 SMART iq_5 89 111 IPR000048 GO:0005515
Vvi4g0095 449 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Vvi4g0095 449 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Vvi4g0095 449 MobiDBLite consensus disorder prediction 282 313 - -
Vvi4g0095 449 MobiDBLite consensus disorder prediction 320 370 - -
Vvi4g0095 449 MobiDBLite consensus disorder prediction 270 370 - -
Vvi4g0095 449 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Vvi4g0095 449 Gene3D - 88 137 - -
Vvi4g0095 449 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Vvi4g0095 449 FunFam IQ-domain 11 89 140 - -
Vvi4g0095 449 Pfam Protein of unknown function (DUF4005) 340 395 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0095 Vvi-Chr4 912060 914578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0095 1 435 IQD Protein Family AT2G26180 67.048 4.49e-175 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0095 - - vvi:100254187 839.336