Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0087 ATGGCTGGCTTGGCACCGGAAGGATCACAATTTGATGCTCGTCAATATGATAGCAAAATGAATGAGTTACTTGGGACTGATGGACAAGATTTCTTCACATCATATGATGAGGTCTATGAAAGTTTTGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAAGGGGCTTGATGTAATTCAGCAAGCACAGTCTGGAACTGGAAAAACAGCAACTTTCTGCTCTGGAATTTTGCAGCAGCTTGATTATGGCTTAGTTGAATGCCAGGCATTGGTCCTTGCACCCACTCGGGAACTTGCCCAACAAATTGAAAAGGTTATGCGAGCACTAGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTCCGTGAAGACCAGCGCATTCTCTCAAGTGGGGTTCATGTCGTTGTGGGTACTCCTGGTAGGGTTTTTGACATGTTGCGCAGGCAATCACTTCGTCCTGATTACATTAAGATGTTTGTGTTAGATGAAGCAGATGAAATGCTTTCACGAGGTTTCAAGGATCAGATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCTCTGCCACGATGCCACCTGAGGCCCTTGAGATCACAAGGAAATTCATGAATAAACCTGTGAGGATTCTGGTGAAACGTGATGAGCTCACCCTTGAGGGTATCAAACAGTTCTATGTCAATGTTGATAAAGAGGAATGGAAGCTTGAGACACTTTGTGATCTCTATGAGACGCTGGCGATCACCCAGAGCGTCATCTTTGTGAACACCCGGCGCAAGGTTGACTGGCTGACGGACAAGATGCGCAGCCGTGACCACACAGTCTCTGCCACCCACGGAGACATGGATCAAAACACAAGAGACATCATCATGCGTGAATTCCGATCTGGTTCCTCTCGTGTGCTCATCACTACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAAGTCTCTCTTGTGATAAACTATGACCTCCCAACACAGCCAGAAAACTACCTCCATCGAATTGGGCGTAGTGGACGATTTGGGAGGAAGGGGGTGGCAATCAACTTTGTGACCAAGGATGATGAGAGGATGCTTTTTGATATCCAAAGGTTTTATAATGTGGTGGTTGAGGAGCTGCCATCAAATGTTGCTGATCTCCTGTGA 1242 0.4622 MAGLAPEGSQFDARQYDSKMNELLGTDGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVVEELPSNVADLL* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0087 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Vvi4g0087 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Vvi4g0087 413 SMART ultradead3 59 256 IPR014001 -
Vvi4g0087 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Vvi4g0087 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Vvi4g0087 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Vvi4g0087 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Vvi4g0087 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Vvi4g0087 413 Gene3D - 249 413 IPR027417 -
Vvi4g0087 413 PANTHER RNA HELICASE 30 397 - -
Vvi4g0087 413 CDD DEADc_EIF4A 44 242 - -
Vvi4g0087 413 CDD SF2_C_DEAD 253 383 - -
Vvi4g0087 413 Gene3D - 30 248 IPR027417 -
Vvi4g0087 413 SMART helicmild6 293 374 IPR001650 -
Vvi4g0087 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Vvi4g0087 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0087 Vvi-Chr4 861243 863278 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0087 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 89.855 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0087 K03257 - vvi:100249159 816.994