Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0086 ATGGGATTGAAAGAAAACCTTTTGAGAGGCATTTATGCATATGGTACTGCACTACCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCTCAGGGATCCTGCAGCAGTTGAATGAGGAATTAACCCAGTGTCAGGCTTTGGTCCTTGCTCCTACTAGAGAGCTTGCCCAGCAAATTGAGAAGGTCATGAGAGCCCTTGGTGATCACTTGAATGTTAAGGTTCATTCTTGTGTTGGTGGGACTGTGGTCAGGGAGGATCAGAGAATCCTCTCTGCTGGTGTCCATGCCGGTACTCCCGGGTGCTTTTGA 372 0.4839 MGLKENLLRGIYAYGTALPSAIQQKGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLNEELTQCQALVLAPTRELAQQIEKVMRALGDHLNVKVHSCVGGTVVREDQRILSAGVHAGTPGCF* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0086 123 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 123 IPR014001 -
Vvi4g0086 123 PANTHER RNA HELICASE 1 122 - -
Vvi4g0086 123 Gene3D - 1 123 IPR027417 -
Vvi4g0086 123 Pfam DEAD/DEAH box helicase 21 120 IPR011545 GO:0003676|GO:0005524
Vvi4g0086 123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 121 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0086 Vvi-Chr4 855695 856165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0086 1 121 Eukaryotic Initiation Factors Gene Family AT3G13920 85.366 1.04e-69 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0086 K03257 - oeu:111367706 212.616