Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0085 ATGTTTGTTCTGGATGAGGCTGATGAAATGCTCTCTAGAGGCTTTAAGGATCAGATCTATGAGATTTTCCAGCTTCTGCCAGAAAGAATCCAGGTGGGTGTTTTCTCTGCTACAATGCCCCCTGAGGTTCTTGAGATTACCAAGAAGTTCATGAACAAGCCTGTGAGGATTCTTGTGAAGCGAGAAGAGCTGACCCTTGAAGGAATCAGGCAGTTTCATGTCAATGTTGAGAGGGAGGTTAGAAACACTATGTGA 255 0.4431 MFVLDEADEMLSRGFKDQIYEIFQLLPERIQVGVFSATMPPEVLEITKKFMNKPVRILVKREELTLEGIRQFHVNVEREVRNTM* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0085 84 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 57 IPR014001 -
Vvi4g0085 84 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 3 11 IPR000629 -
Vvi4g0085 84 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 79 - -
Vvi4g0085 84 Pfam DEAD/DEAH box helicase 2 43 IPR011545 GO:0003676|GO:0005524
Vvi4g0085 84 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 60 IPR027417 -
Vvi4g0085 84 Gene3D - 1 68 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0085 Vvi-Chr4 855317 855654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0085 1 79 Eukaryotic Initiation Factors Gene Family AT1G72730 86.076 1.95e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0085 K03257 - tcc:18588362 147.132