Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0080 ATGCCGAAACTAACCTTTTTATTTGCCAAAATTCCACTCCCCGCTCTGTTTCTCCTCCTCGTCCTCTCCTTACCCTTTCAAGTAATTTCCCAGGACGATGAACGATCAATCCTACTAGACGTTAAACAACAACTCGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTCGCCCTGTGATTGGCCGGAAATTAAATGCACCGACAATACCGTCACTGCAATTTCACTCCACAATAAGGCCATCAGCGAGAAAATTCCAGCCACAATTTGTGACCTCAAGAACCTCATCGTACTTGACCTCTCCAACAATGACATTCCCGGCGAGTTCCCGAATATTCTCAATTGTTCCAAGCTTGAATATCTGCGCTTGTTGCAAAACTTCTTCGCGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTCCGGTACCTGGACCTCACCGCAAACTTCTTCTCTGGAGATATTCCCGCAGCAATTGGGCAGCTACGGGAGCTGTTCTACTTGTTTCTGGTCGAAAATGAGTTCAACGGCACCTGGCCAACAGAGATTGGTAATTTGGCGAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCATGCCCTCAGCCCTTCCAAAAGAGTTTGGCGCATTGAAGAAGCTGAAGTATCTGTGGATGACGGACGCGAATTTGATCGGCGGAATACCGGAGAGCTTCAACAATCTGTCGAGTCTGGAACACTTGGATCTCTCACTCAACAAATTGGAAGGTACGATCCCGGGAGGCATGCTTACGTTGAAGAATTTGACCAATTTGTATTTATTCAATAATAGATTGTCCGGCCGCATTCCTTTATCCATAGAAGCTCTCAACTTGAAAGAAATTGATCTTTCAAAGAACTATTTGACGGGGCCGATACCAACGGGTTTCGGGAAGCTACAAAATTTGACGGGTTTGAATCTTTTCTGGAATCAGTTGGCAGGAGAGATACCAACAAATATAAGCCTCATTCCTACACTGGAAACCTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTGCCTCCAGCATTTGGCCTTCATTCGGAGCTCAAAAGCTTTGAGGTTTCCGAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGGCTTTGCTTGGAGTGGTGGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCCCTCGGGAATTGCACAAGTTTGCTCACAATTCAGCTTTCCAACAATCGCTTTTCAGGTGAGATTCCTTCCGGCATCTGGACATCCCCGGACATGGTATGGCTGATGTTAGCTGGAAATTCATTCTCGGGGACACTTCCAAGTAAATTGGCAAGGTATTTGTCCAGAGTGGAGATCAGTAACAACAAGTTTTCTGGTCCAATTCCTACTGAAATCTCTTCTTGGATGAACATAGCTGTGCTCAATGCCAGCAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTCACCAGTCTTTGGAACATCTCTGTTCTGTTGCTTGATGGGAATCAATTCTCGGGTGAGCTTCCATCGGAGATCATCTCATGGAAGTCGCTCAATGATTTGAATCTCTCAAGAAACAAACTTTCTGGCCCAATTCCCAAGGCATTAGGTTCTTTACCTAACCTTAATTACCTCGACCTGTCGGAAAACCAGTTCTTAGGTCAAATTCCTTCTGAACTTGGTCATTTGAAGCTTACTATCCTCGATCTTTCGTCCAACCAACTCTCTGGGATGGTCCCCATTGAGTTTCAAAATGGAGCATACCAAGACAGTTTCTTGAACAATCCCAAGCTGTGTGTCCATGTTCCCACTCTGAACCTCCCTAGATGTGGTGCCAAACCCGTTGACCCCAACAAATTGTCAACCAAATATCTCGTTATGTTCCTAATTTTCGCTCTATCTGGTTTCCTAGGTGTTGTTTTCTTTACCCTGTTCATGGTTCGAGACTATCACAGGAAGAATCACAGTCGAGACCATACAACTTGGAAGCTTACTCCATTCCAAAATCTGGATTTCGATGAACAGAACATATTGTCCGGTTTGACAGAAAATAATTTGATCGGACGTGGTGGGTCAGGGGAATTATACCGAATTGCTAATAACCGTTCTGGTGAACTCCTAGCGGTTAAAAGGATTTTTAATAAAAGGAAATTGGATCACAAGCTTCAGAAACAATTCATAGCAGAAGTCGGGATATTGGGCGCCATACGCCATTCCAATATAGTGAAGTTGTTGGGTTGCATATCAAATGAAAGTTCATGCCTTCTTGTTTATGAGTACATGGAAAAGCAGAGTTTGGATAGATGGATTCATGGGAAGAAGCAGAGAACATCGTCCATGACAAGTTCAGTCCATAACTTTGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATCGGAGCTGCAGAAGGCCTACGCCACATGCATGAATACTATTCTGCCCCGATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCTGAGTTCAACGCGAAAATTGCTGATTTTGGATTGGCCAAGATGTTGGTCAAGCGAGGAGAGCCCAACACCATGTCAGGAATTGCAGGCTCTTATGGATATATTGCCCCTGAGTTTGCTTATACAAGAAAGGTGAACGAGAAGATTGATGTATACAGCTTTGGAGTAGTCTTGCTTGAGCTGGTGAGTGGGAGAGAACCCAACAGCGTGAACGAGCACAAGTGCCTCGTAGAATGGGCATGGGATCAGTTCAGAGAAGAGAAAAGCATTGAGGAAGTGGTGGATGAGGAGATCAAGGAACAATGTGACAGAGCACAAGTGACCACTCTCTTCAACCTAGGCGTCAGGTGCACTCAGACATCACCATCAGATAGGCCCACAATGAAGAAGGTTCTGGAAATTCTTCAACGGTGTAGTCAGCACTCAGCAGGGCCATTGAAGAAAGAAAAAGGACCATGA 2973 0.448 MPKLTFLFAKIPLPALFLLLVLSLPFQVISQDDERSILLDVKQQLGNPPSLQSWNSSSSPCDWPEIKCTDNTVTAISLHNKAISEKIPATICDLKNLIVLDLSNNDIPGEFPNILNCSKLEYLRLLQNFFAGPIPADIDRLSRLRYLDLTANFFSGDIPAAIGQLRELFYLFLVENEFNGTWPTEIGNLANLEQLAMAYNDKFMPSALPKEFGALKKLKYLWMTDANLIGGIPESFNNLSSLEHLDLSLNKLEGTIPGGMLTLKNLTNLYLFNNRLSGRIPLSIEALNLKEIDLSKNYLTGPIPTGFGKLQNLTGLNLFWNQLAGEIPTNISLIPTLETFKVFSNQLSGVLPPAFGLHSELKSFEVSENKLSGELPQHLCARGALLGVVASNNNLSGEVPKSLGNCTSLLTIQLSNNRFSGEIPSGIWTSPDMVWLMLAGNSFSGTLPSKLARYLSRVEISNNKFSGPIPTEISSWMNIAVLNASNNMLSGKIPVEFTSLWNISVLLLDGNQFSGELPSEIISWKSLNDLNLSRNKLSGPIPKALGSLPNLNYLDLSENQFLGQIPSELGHLKLTILDLSSNQLSGMVPIEFQNGAYQDSFLNNPKLCVHVPTLNLPRCGAKPVDPNKLSTKYLVMFLIFALSGFLGVVFFTLFMVRDYHRKNHSRDHTTWKLTPFQNLDFDEQNILSGLTENNLIGRGGSGELYRIANNRSGELLAVKRIFNKRKLDHKLQKQFIAEVGILGAIRHSNIVKLLGCISNESSCLLVYEYMEKQSLDRWIHGKKQRTSSMTSSVHNFVLDWPTRLQIAIGAAEGLRHMHEYYSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKRGEPNTMSGIAGSYGYIAPEFAYTRKVNEKIDVYSFGVVLLELVSGREPNSVNEHKCLVEWAWDQFREEKSIEEVVDEEIKEQCDRAQVTTLFNLGVRCTQTSPSDRPTMKKVLEILQRCSQHSAGPLKKEKGP* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0080 990 FunFam Kinase family with leucine-rich repeat domain-containing protein 770 988 - -
Vvi4g0080 990 CDD STKc_IRAK 696 975 - -
Vvi4g0080 990 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Vvi4g0080 990 PANTHER OS04G0122200 PROTEIN 325 451 - -
Vvi4g0080 990 Gene3D Ribonuclease Inhibitor 83 285 IPR032675 -
Vvi4g0080 990 Gene3D Ribonuclease Inhibitor 385 621 IPR032675 -
Vvi4g0080 990 Gene3D Ribonuclease Inhibitor 25 82 IPR032675 -
Vvi4g0080 990 Gene3D Transferase(Phosphotransferase) domain 1 770 988 - -
Vvi4g0080 990 SUPERFAMILY Protein kinase-like (PK-like) 669 973 IPR011009 -
Vvi4g0080 990 Gene3D Ribonuclease Inhibitor 286 384 IPR032675 -
Vvi4g0080 990 Pfam Leucine rich repeat 524 561 IPR001611 GO:0005515
Vvi4g0080 990 Pfam Leucine rich repeat 233 276 IPR001611 GO:0005515
Vvi4g0080 990 FunFam Receptor-like protein kinase HSL1 31 185 - -
Vvi4g0080 990 FunFam Uncharacterized protein 332 622 - -
Vvi4g0080 990 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515
Vvi4g0080 990 SUPERFAMILY L domain-like 391 594 - -
Vvi4g0080 990 ProSiteProfiles Protein kinase domain profile. 690 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0080 990 FunFam Receptor-like protein kinase HSL1 670 769 - -
Vvi4g0080 990 SMART LRR_sd22_2 215 241 - -
Vvi4g0080 990 SMART LRR_sd22_2 263 289 - -
Vvi4g0080 990 SMART LRR_sd22_2 571 592 - -
Vvi4g0080 990 SMART LRR_sd22_2 94 125 - -
Vvi4g0080 990 SUPERFAMILY RNI-like 76 420 - -
Vvi4g0080 990 SMART LRR_typ_2 310 334 IPR003591 -
Vvi4g0080 990 SMART LRR_typ_2 141 165 IPR003591 -
Vvi4g0080 990 SMART LRR_typ_2 548 572 IPR003591 -
Vvi4g0080 990 SMART LRR_typ_2 573 594 IPR003591 -
Vvi4g0080 990 SMART LRR_typ_2 239 263 IPR003591 -
Vvi4g0080 990 SMART LRR_typ_2 94 117 IPR003591 -
Vvi4g0080 990 FunFam Uncharacterized protein 207 286 - -
Vvi4g0080 990 Pfam Protein kinase domain 692 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0080 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Vvi4g0080 990 Gene3D Phosphorylase Kinase; domain 1 661 769 - -
Vvi4g0080 990 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Vvi4g0080 990 ProSiteProfiles Leucine-rich repeat profile. 96 118 IPR001611 GO:0005515
Vvi4g0080 990 SMART serkin_6 690 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0080 990 ProSiteProfiles Leucine-rich repeat profile. 573 594 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0080 Vvi-Chr4 807228 810293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0080 23 975 Receptor kinase-like Gene Family AT5G25930 54.859 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0080 Pkinase 6.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0080 K00924 - vvi:100256117 1932.53