Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0079 ATGGCTTCATGGGAAGAAGCAGAGGACATCGTCCATAACTTTGTCTTGAATTGGCCTACAAGGTTGCAGATTGCCATCGGAGCTGCAAAAGGCCTACGCCACATGCATGAATACTGTTCTGCCCTGATTATACATCGAGATGTAAAGGCCAGCAACATCTTGCTAGACGCAAATTCAACGCGAAAATTGAGGATTTTGGATTGGCCAAGATGTTGGTCAGGCAAGGGGAGCCCAACACCCAGTCAGAAGTTGCAGGCACTTACGGATATCTTGCCCCTGTATGCTTACGCAACAAAGGTGAACGAGAAGAACGATGTATATGGCTTTGGAGTAGTCCTGCCTGAGCTGGTGACGGGGAGAGAACGCAACGGCGAGCACATGTGCCTTGTAGAATGGGCATGGGGTCAGTTCAGGAAGGTTTTGGAAATTCTTCAACGGTGCAGTCCTCAGCAGGGCCATCGAAGAAAGAAAAAGGACCATGAAGTTGCACCCCTGCTTCGAAATGGCACTTAA 513 0.4912 MASWEEAEDIVHNFVLNWPTRLQIAIGAAKGLRHMHEYCSALIIHRDVKASNILLDANSTRKLRILDWPRCWSGKGSPTPSQKLQALTDILPLYAYATKVNEKNDVYGFGVVLPELVTGRERNGEHMCLVEWAWGQFRKVLEILQRCSPQQGHRRKKKDHEVAPLLRNGT* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0079 170 Gene3D Transferase(Phosphotransferase) domain 1 6 167 - -
Vvi4g0079 170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
Vvi4g0079 170 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0079 170 PANTHER OS01G0253100 PROTEIN 8 139 - -
Vvi4g0079 170 Pfam Protein kinase domain 24 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0079 170 SUPERFAMILY Protein kinase-like (PK-like) 11 124 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0079 Vvi-Chr4 794454 795061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0079 16 138 Receptor kinase-like Gene Family AT5G25930 47.244 1.81e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0079 Pkinase 1.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0079 - K00924 vvi:100262856 196.052