Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0077 ATGGGTAGGAAATGCTCACACTGTGGGAACATTGGTCATAATTCAAGGACTTGCACCACTCTCAGAGGGAGTAGTGGTGTTAGTAGTAGTAGTCTTACTGGTGGGGTGAAGCTCTTTGGGGTGCAGCTTGAGATGCCTTCTACAACTCCTCTTCCAATGAAGAAAAGCTTTAGCTTGGATTGCTTGCCATCTTCATCATCCACACCCTCCTCGTCAACATCTTCTCGAGTTTCGGCCGACGAAAATTCTGATAAATTCTCCCGTGGTTACCTCTCTGATGGCCTAATTGCCAGAACCCAAGAGAGAAAGAAAGGTGTTCCATGGACTGAGGAGGAGCACAGGACTTTCCTCCTGGGGCTTGAAAAGCTTGGAAGGGGTGATTGGAGGGGCATCTCCAGGAACTTTGTGACTACTAGAACTCCAACCCAAGTAGCCAGTCATGCCCAGAAGTATTTTCTTAGACAGAGCAGCCTCAACAAGAAGAAGCGCAGACCCAGCCTCTTTGATTTGGTGGAAAGCAGCAAATTCTCATTTCATCTGGTCAATCCCAGCATTCCTCAACCCAATCAGCCCTCCATTCCATGTGGGTTTTCACTGAAGACCACAAATTCTACTCTGTTAGATCTCAATTTCTGA 636 0.4717 MGRKCSHCGNIGHNSRTCTTLRGSSGVSSSSLTGGVKLFGVQLEMPSTTPLPMKKSFSLDCLPSSSSTPSSSTSSRVSADENSDKFSRGYLSDGLIARTQERKKGVPWTEEEHRTFLLGLEKLGRGDWRGISRNFVTTRTPTQVASHAQKYFLRQSSLNKKKRRPSLFDLVESSKFSFHLVNPSIPQPNQPSIPCGFSLKTTNSTLLDLNF* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0077 211 ProSiteProfiles Myb-like domain profile. 100 152 IPR001005 -
Vvi4g0077 211 ProSiteProfiles SANT domain profile. 108 156 IPR017884 -
Vvi4g0077 211 PANTHER TRANSCRIPTION FACTOR KUA1 3 184 - -
Vvi4g0077 211 SUPERFAMILY Homeodomain-like 101 157 IPR009057 -
Vvi4g0077 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 156 IPR017930 -
Vvi4g0077 211 MobiDBLite consensus disorder prediction 65 80 - -
Vvi4g0077 211 FunFam transcription factor MYB1R1 106 157 - -
Vvi4g0077 211 CDD SANT 107 152 IPR001005 -
Vvi4g0077 211 SMART sant 104 154 IPR001005 -
Vvi4g0077 211 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Vvi4g0077 211 MobiDBLite consensus disorder prediction 65 85 - -
Vvi4g0077 211 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Vvi4g0077 211 Gene3D - 106 158 - -
Vvi4g0077 211 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0077 Vvi-Chr4 774001 775186 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi4g0077 Myb_DNA-binding 3.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0077 - - vvi:100242268 376.711