Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0075 ATGGAGAATGATATGTTCAATGTGCCAATGGATATAGCTGGCCGGAATCATGTGGTCATGGATGGAGTTTCTTCACACATGTCCACAAATTCACTCATTCAGTCTGATTTATTTCACCTCAACAGCCAAAACCAGTTCATGATTGGACTTCCCGTGCTTCCAATGTTGCAAGGAGAAACTATAAATGGTCTCCATGCTGATTTTCAAATGACTAGTCGCCCAGCGATTGTTGATTCTGATGAGTTGGTTTCTAGAAATTCATCACTTGGACAAGCCTGCCCCATTGGAAGCACCAATGGTCAGGAGCAATTCAATGAAGTGACAACCATTTCTGCTTCTTCACTCGCCACCCTTTTGGCCACAAAAAGTGGACTTCACGAAAATCTAGATAATTTAGCCATTTCAGCGACTTCAGTTTTCCCTTCAGAAGATTTAAGGACTTTTGTCTCAAGTGACTGCTCCAATACTTCAAATTCTTCACTTGCAACCTCAGTGGACTGTCCCTATGATGGAGTACTAAGTGACATGACTCGTAAATGGGGTTTTGACAAGTTTCTTCCTTCTCCAGAGCTTACTGGGAAAACCACTTTAAGAACCGGGTTTCAACCATTTCATATCATAGGAGACATGGATCCAAATGGGTGGATATCATCAAGTGCAGACACGAGAACAGTTCCTCCTTATGGCTCCTCTAATGAGTTGTCTCTAAGTCTTGCCACTTCTCAGCCCTCTGTTATGTGCGGGGCAACTGCTCCAAATCAGTGCTCCGAGAGAAGCTGTTCGGGTGTAACTCACCCTTGCTTAAATGAAGTAGGATTGGGCTCAGAACAAGGTTCTTGCAACAGTAAGGAGCTTTCCCTGAGTTTTGGTTCTTATAGACCTGCCCAATTCTCTCAAGTAATATCTGGATCAAGATATCTTCATGTGATTCAGGAAATACTTGCTGAAATTTTGAACTATTCGCTTGAAAATCTAGACCACTCGATTTATTCAACCACTAGGACTGGGGGTCAGGCAAATGTGCAATTATCTTCAGGTTATGCTGCTCAGAGAGGGCTTTCAGTGATGGGTTCTGATGAATTTCCTGATGAGGATGGTAGATATGCAGTTCCAATGGATCCGGTGTTGCAAAAACGGGAAGTTGAAGCTAAGAAAACCCAACTTCTGGCTCTACTTCAAGTGGTTGATGACCAATATAACCAATGCTTGGACGAGATTCATACGGTGATATCTGCATTCCATGCTGCAACAGAGTTGGATCCTCAGATACATGCTCGATTTGCCCTTCATACGATCTCTTTGCTATATAAAAACCTCAGAGAAAGAATTAGCAACCAAATCCTTGCGATGGGAACACGTTTCACAAATGGATGCACAAGTGAAAAGGAGAGACCACCTTTTGAGTCTTCTTTCATCCAAAAGCAATGGGACCTCCAGCAGCTAAGAAGAAAAGATCATCAACTATGGAGACCGCAAAGAGGCTTGCCAGAAAGATCTGTCTCAGTTTTACGGGCATGGATGTTCCAGAACTTTCTACATCCGTATCCTAAGGATGCGGAGAAGCATTTGCTTGCAGTAAAAAGTGGATTGACAAGGAGCCAGGTTTCCAATTGGTTTATAAATGCTCGGGTCCGACTGTGGAAGCCAATGATAGAGGAAATGTACTCAGAGATGAACAGGAGAAAGGGTCGTAGAAATGATGAAGAGTCCAACAACAGCAATCGAAGAAGCACCATAAGCATGGACAATCAAAGATATAAAATCATCTGA 1770 0.4288 MENDMFNVPMDIAGRNHVVMDGVSSHMSTNSLIQSDLFHLNSQNQFMIGLPVLPMLQGETINGLHADFQMTSRPAIVDSDELVSRNSSLGQACPIGSTNGQEQFNEVTTISASSLATLLATKSGLHENLDNLAISATSVFPSEDLRTFVSSDCSNTSNSSLATSVDCPYDGVLSDMTRKWGFDKFLPSPELTGKTTLRTGFQPFHIIGDMDPNGWISSSADTRTVPPYGSSNELSLSLATSQPSVMCGATAPNQCSERSCSGVTHPCLNEVGLGSEQGSCNSKELSLSFGSYRPAQFSQVISGSRYLHVIQEILAEILNYSLENLDHSIYSTTRTGGQANVQLSSGYAAQRGLSVMGSDEFPDEDGRYAVPMDPVLQKREVEAKKTQLLALLQVVDDQYNQCLDEIHTVISAFHAATELDPQIHARFALHTISLLYKNLRERISNQILAMGTRFTNGCTSEKERPPFESSFIQKQWDLQQLRRKDHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYSEMNRRKGRRNDEESNNSNRRSTISMDNQRYKII* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0075 589 SMART HOX_1 489 553 IPR001356 GO:0003677
Vvi4g0075 589 MobiDBLite consensus disorder prediction 558 583 - -
Vvi4g0075 589 Pfam Associated with HOX 300 444 IPR006563 -
Vvi4g0075 589 MobiDBLite consensus disorder prediction 558 572 - -
Vvi4g0075 589 CDD homeodomain 489 550 IPR001356 GO:0003677
Vvi4g0075 589 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 237 570 - -
Vvi4g0075 589 SUPERFAMILY Homeodomain-like 491 558 IPR009057 -
Vvi4g0075 589 Pfam Homeobox KN domain 506 545 IPR008422 GO:0003677|GO:0006355
Vvi4g0075 589 ProSiteProfiles 'Homeobox' domain profile. 486 549 IPR001356 GO:0003677
Vvi4g0075 589 Gene3D - 492 572 - -
Vvi4g0075 589 SMART prehox3 295 445 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0075 Vvi-Chr4 747055 750076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0075 169 562 Homeobox Transcription Factor Family AT4G32980 48.615 6.80e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi4g0075 POX 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0075 - - vvi:100249241 1164.44