Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0066 ATGGCGAACGTACCTGGACCGTTGATTTGGGAGATAGTGAAGAAGAATAACTCGTTTCTTGTGAAGGAGTTTGGAAATGGAACTGCAAAAGTACAGTTCAGTAAAGAGACTAACAACCTCTGCAATGTTCACTCCTTCAAGCACTCCGGACTAGCAAACCGCAAGACAGTTACAATTCAGCCCGGAGGTAAAGATCTGTCTGTGGTACTTGCAACTTCAAAAACAAAGAAACAAAACAATCCCTCAATTTCACTTCAGAAGTCAGTAATGAAGAAGGAGTTCCCTCGAATGGCAAAAGCTGTTGTGAATCAGGTTTCAGATAATTATTACAGGGTTGATCTAAAGAAGGCAGCTCTTGCAAGGTTGAGTGCTGTGCACAGGAGCCTCAAGGTTGCCAAATCTGGTGTGAAGAAGAGGAACAGGCAGGCTGTCTAA 435 0.4345 MANVPGPLIWEIVKKNNSFLVKEFGNGTAKVQFSKETNNLCNVHSFKHSGLANRKTVTIQPGGKDLSVVLATSKTKKQNNPSISLQKSVMKKEFPRMAKAVVNQVSDNYYRVDLKKAALARLSAVHRSLKVAKSGVKKRNRQAV* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0066 144 PANTHER 60S RIBOSOMAL PROTEIN L28 1 143 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vvi4g0066 144 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Vvi4g0066 144 Gene3D - 7 133 - -
Vvi4g0066 144 FunFam 60S ribosomal protein L28 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0066 Vvi-Chr4 684566 687056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0066 1 143 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 75.524 3.20e-77 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0066 K02903 - vvi:100245594 283.493