Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0061 ATGCTTGAGGAGACTTGGATTTTAAAACTTGGTGTTTTGTCAGCTGAGATGGGAATCTGCATATCCACTGTATCTTCAGAGATTCAAGACTCTGGAGATGGCCATGAGAATATGGTATTCTTTGAAGATTCCACTGCTTCTATAGGAATTCAGAGGCTTGGCTCTCTTCATTCTCAGCCAGGAAGCAAAGGACTAAACCAAGATGCTGCCATCCTCCATCAGGGCTATGGAATGGAAGATGGAGCTTTCTGTGGAGTTTTTGACGGCCATGGAAAGAATGGTCACATAGTGAGCAAAATTGTGAGAAACCACTTACCATCATTGCTGCTAAACCAAAAGAACGCGCTCTTAAAAGCGAATACTGCAATGAAGGGTGAAGATTTGCATACTCAAAAGGAAAGAAGAGATGGCATGGTGATGCCAAACAAGATTTTCAGGAAATGGCAAGAGGCTTGTGTTGGAGCTTTCAAGGTGATGGACAAGGAGATTAAGCTTCAAGAGGATTTGGACTGCTCTTGCAGTGGAACCACTGCTGTAGTCATAGTAAAACAGGGAGACGATCTTGTTATAGCTAATCTTGGCGATTCAAGAGCAGTTTTAGGGACAATTACTGAGAATGGAGTCACTGCTGTTCAGTTAACTACTGATTTGAAGCCTGGCTTGCCCATGGAGGCAGACCGAATAAGGAAATGCAATGGCAGAGTGATCTCGCTGAAGGAAGAGCCGCACATTCAGCGCGTGTGGTTGCCCAATGAGGACTCACCTGGCCTAGCCATGTCTCGAGCTTTTGGAGACTTCCTGCTCAAGAACCATGGCATAATCGCCATCCCTGATATCTCATATCGCCGTCTAGCTTCCAATGACCAGTTTCTTGTTCTAGCAACTGATGGGGTGTGGGATGTGCTGAGTAACAGCCAAGTTGCAGGGATAGTTTGGTCAGCAGAGAGTGAAGAGGAGGCGGCGAAAGCAGTGGTGGATGCGGCCACTGCTGCATGGAAGCACAAGTTCCCTTCTTCAAAGGTGGATGACTGCACTGTGGTCTGCCTCTTCTTGCAGAAGAGGCAGCAAGTGCTTCAAGCCTGCAACCCTCCCAGTTGA 1098 0.4699 MLEETWILKLGVLSAEMGICISTVSSEIQDSGDGHENMVFFEDSTASIGIQRLGSLHSQPGSKGLNQDAAILHQGYGMEDGAFCGVFDGHGKNGHIVSKIVRNHLPSLLLNQKNALLKANTAMKGEDLHTQKERRDGMVMPNKIFRKWQEACVGAFKVMDKEIKLQEDLDCSCSGTTAVVIVKQGDDLVIANLGDSRAVLGTITENGVTAVQLTTDLKPGLPMEADRIRKCNGRVISLKEEPHIQRVWLPNEDSPGLAMSRAFGDFLLKNHGIIAIPDISYRRLASNDQFLVLATDGVWDVLSNSQVAGIVWSAESEEEAAKAVVDAATAAWKHKFPSSKVDDCTVVCLFLQKRQQVLQACNPPS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0061 365 SMART PP2C_4 42 349 IPR001932 -
Vvi4g0061 365 PANTHER PROTEIN PHOSPHATASE 57 349 IPR015655 GO:0004722|GO:0006470
Vvi4g0061 365 CDD PP2Cc 52 351 IPR001932 -
Vvi4g0061 365 ProSiteProfiles PPM-type phosphatase domain profile. 52 351 IPR001932 -
Vvi4g0061 365 SUPERFAMILY PP2C-like 54 352 IPR036457 -
Vvi4g0061 365 Gene3D - 45 354 IPR036457 -
Vvi4g0061 365 Pfam Protein phosphatase 2C 78 330 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0061 Vvi-Chr4 660597 662123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0061 17 356 PP2C-type Phosphatase Gene Family AT5G26010 53.161 5.06e-114 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0061 - - vvi:100266178 700.664